| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4220 |
|---|
| Symbol | |
|---|
| ID | 7971304 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4459972 |
|---|
| End bp | 4461705 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644794807 |
|---|
| Product | type IV-A pilus assembly ATPase PilB |
|---|
| Protein accession | YP_002946099 |
|---|
| Protein GI | 239817189 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCTG CCGAACTTCC TGTTAAAGAA AACACGCAAA TCGCCCTCCC GGGCCTTGCG
CGTGCCTTGG TCTCGGCCGG CAAGCTTCCT GCGAAGACCG CGGAAGACAT CTATCAAAAG
TCGCTGAGCG GCCGCACCAG CTTCATTGCC GAGCTGACCG GCAGCGGCGC CGTCTCGGCC
GCCGACCTCG CCCACACGCT GTCCAGCGCC TTCGGCGCGC CGCTGCTGGA CCTGGACGCC
ATCGACCACC AGCGCCTGCC CAAGGACCTG CTCGACCCGA AGCTGTGCCA CGCCTACCGG
ATCGTGGTTC TCAGCAAGCG CAACAACCGT CTCATCGTTG CAACGGCCGA CCCTTCGGAC
CAGCAGGCGG TGGAAAAGAT CAAGTTCGCC TCCCAGATGG GCGTGGACTG GGTCATTGCC
GAATACGACA AGCTCTCGCG CATGATCGAA GCCGCCGCGG TCACTGCGGC GGAAACCATC
AACAGCATCG TCGGCGCCGA GTTCGAGTTC GACGACGTCT CGGCGGACAC CTCGGGCGAT
GCCAACGAAC AGGCCATCGC CGAGGTCGAG GACGCGCCGG TCGTGCGCTT CCTGCACAAG
ATGCTGCTCG ACGGTGTCAG CATGCGGGCC TCGGACATCC ACTTCGAGCC CTACGAGCAC
AACTACCGGG TGCGCTTTCG CATCGACGGC GAGCTGCGCG AGATCGCGAG CCCGCCCACG
CTCATCAAGG ACAAGCTGGC GTCGCGCATC AAGGTCATCT CGCGGCTCGA CATTTCGGAG
AAGCGCGTGC CGCAGGACGG CCGCATGAAG CTCAAGATCG GGCCCGACCG CGTGATCGAC
TTCCGCGTCA GCACGCTGCC CACGCTGTTC GGCGAGAAGA TCGTGATCCG TATCCTGGAC
CCGAGCAGCG CGCGCCTGGG CATCGACGCA CTGGGCTACG ACGCCGACGA AAAGGAGCGC
CTGCTGCATG CGATCGGCCG CCCCTATGGC ATGGTGCTGG TGACGGGCCC CACGGGTTCG
GGCAAGACGG TGTCGCTCTA CACCTGCCTG AACCTGCTGA ACCAGCCCGG CGTCAACATC
GCCACGGCGG AAGACCCGTC CGAAATCAAC CTGCCGGGCG TGAACCAGGT GAACGTCAAC
GAGCGCGCCG GGCTCACCTT CGCGGCGGCG CTGCGCGCCT TCCTGCGGCA GGATCCCGAC
ATCATCATGG TCGGCGAAAT CCGCGACCTC GAAACCGCCG ACATCTCGAT CAAGGCCGCG
CAGACGGGCC ACCTGGTGCT CTCGACGCTG CACACCAACG ACGCGCCGAC CACGCTCACG
CGCATGCGCA ACATGGGCAT CGCGCCGTTC AACATTGCCT CCAGCGTGAT CCTGATCACG
GCGCAGCGGC TCGCGCGGCG CCTGTGCCAC GTATGCCGCG CGCCGGCCGA CATGCCGCGC
CAGGCGCTGC TGGATGCGGG CTTCAAGGAA GAACAGCTCG ACGGTACCTG GAAGCCCTAT
CGGCCGGTCG GCTGCGCGGC CTGCAGCAAC GGCTACAAGG GCCGGGTCGG CATCTACCAG
GTGATGCCGA TCTCGGAAGC CATCCAGGCC ATCATCCTGC GCGACGGCAG CGCACTCGAC
ATCGCGCGCC AGTCCGAGGC CGAGGGCGTG CGCTCGCTGC GGCAGTCGGG CCTGCGAAAA
GTCATGCAAG GGCTCACCTC ACTCGAAGAA GTGGTGGCGG TCACCAACGA ATAA
|
|---|
| Protein sequence | MAAAELPVKE NTQIALPGLA RALVSAGKLP AKTAEDIYQK SLSGRTSFIA ELTGSGAVSA
ADLAHTLSSA FGAPLLDLDA IDHQRLPKDL LDPKLCHAYR IVVLSKRNNR LIVATADPSD
QQAVEKIKFA SQMGVDWVIA EYDKLSRMIE AAAVTAAETI NSIVGAEFEF DDVSADTSGD
ANEQAIAEVE DAPVVRFLHK MLLDGVSMRA SDIHFEPYEH NYRVRFRIDG ELREIASPPT
LIKDKLASRI KVISRLDISE KRVPQDGRMK LKIGPDRVID FRVSTLPTLF GEKIVIRILD
PSSARLGIDA LGYDADEKER LLHAIGRPYG MVLVTGPTGS GKTVSLYTCL NLLNQPGVNI
ATAEDPSEIN LPGVNQVNVN ERAGLTFAAA LRAFLRQDPD IIMVGEIRDL ETADISIKAA
QTGHLVLSTL HTNDAPTTLT RMRNMGIAPF NIASSVILIT AQRLARRLCH VCRAPADMPR
QALLDAGFKE EQLDGTWKPY RPVGCAACSN GYKGRVGIYQ VMPISEAIQA IILRDGSALD
IARQSEAEGV RSLRQSGLRK VMQGLTSLEE VVAVTNE
|
|---|
| |