| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4210 |
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| Symbol | |
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| ID | 7971293 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4450510 |
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| End bp | 4451793 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794796 |
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| Product | protein of unknown function DUF21 |
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| Protein accession | YP_002946089 |
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| Protein GI | 239817179 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1253] Hemolysins and related proteins containing CBS domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCCTCA CCCAAAGCCT GCTCATCATC GTCCTGCTGA TCGCGATGAG CGCGTTCTTC
TCCCTTGCCG AAATCACGCT GGCCGCCTCG CGGCGCCTGC GCCTGCGCCA GATGGCCGAC
GAGGGCGATG CGCGGGCCGA GCGCGTGCTG CGCGTGCAGG AGCAGCCGGG CCACTACTTC
ACCGTGGTGC AGATCGGCCT CAATGCGGTG GCGATCCTCG GCGGCGTGGT CGGCGAGGGC
TCGCTCAGTC CCTACTTCGC GCGCTTCCTC GAGGGCTGGA TGAGCGTGGA GGCCTCGGCC
AACGTGGCCT TCCTGTGCTC GTTCGTGATC GTCATCGCGG TGTTCCTGGT GTTCGCCGAC
CTGTTCCCCA AGCGCCTGGG CATGAGCGAC CCCGAGCGCA TCGCGGTTCG CATGGTGGGC
CCGATGATGG TGCTGATCAC CGCCTTCAAG CCGCTGGTGT GGTTCTTCAC GCGCTCCACC
GACATGCTCT TCAAGCTGCT GGGCATGCCG CTGGTGCGCG ACGACAAGAT CACCTCGGCC
GACATCCTGG CCATGACCGA GGCCGGTGCG CGCGCGGGCG TGCTCGCGGT GCGCGAGCAG
CAGGTGATCG CCAACGTGTT CGAACTCGAC ACGCGGCTGG TCAGCAGCGT GATGACGGTG
CGCGACAACA TCGCCTGGTT CCTGCACGAC GACCCGGAAT CGGTGCTGCG GGCGCGCATC
GTGGCCGAGC CTTTTTCGGC CTACCCGGTG TGCGACGGCG ACATCGACCA TGTGCTCGGC
TACGTCGACG CCAAGGAGAT GTTCCAGCGC GTGCTCAGCG GCCAGCCGCT GGCCTTCGAC
CAGGGCCTCA CGCTGCACAA GGCGCTGGTC ATTCCCGACC GGCTCACGCT CACCGAGGTG
CTCGAGCAGT TCCAGCAGGC GCACGAAGAC TTCGCGATCG TGGTCAACGA ATACAGCCTG
GTGGTGGGCG TGATCACGCT CAACGACGTG ATGAGCACGG TGATGGGCGA CCTCGTCTCC
ATGCCCGACG AGGAACAGAT CGTGAAGCGC GACGAGAACT CGTGGCTGAT CGACGGCGTC
ACGCCGATCC AGGACGTGCA GCGCGCGCTG CACATCGACG AGATGCCGCA CCCGGACGAC
TACGAAACGC TGGCCGGCTT CCTGATGGTG ATGCTGCGGC GGGTGCCCAA GCGCACCGAC
AGCGTGAGCT GGGGCGGCTA CACCTTCGAG GTGATGGACG TCGACAGCTA CCGCATCGAC
CAGGTCATGG TCACGAAAAC CTAG
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| Protein sequence | MTLTQSLLII VLLIAMSAFF SLAEITLAAS RRLRLRQMAD EGDARAERVL RVQEQPGHYF
TVVQIGLNAV AILGGVVGEG SLSPYFARFL EGWMSVEASA NVAFLCSFVI VIAVFLVFAD
LFPKRLGMSD PERIAVRMVG PMMVLITAFK PLVWFFTRST DMLFKLLGMP LVRDDKITSA
DILAMTEAGA RAGVLAVREQ QVIANVFELD TRLVSSVMTV RDNIAWFLHD DPESVLRARI
VAEPFSAYPV CDGDIDHVLG YVDAKEMFQR VLSGQPLAFD QGLTLHKALV IPDRLTLTEV
LEQFQQAHED FAIVVNEYSL VVGVITLNDV MSTVMGDLVS MPDEEQIVKR DENSWLIDGV
TPIQDVQRAL HIDEMPHPDD YETLAGFLMV MLRRVPKRTD SVSWGGYTFE VMDVDSYRID
QVMVTKT
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