Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4206 |
Symbol | prfA |
ID | 7971943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4447551 |
End bp | 4448639 |
Gene Length | 1089 bp |
Protein Length | 362 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644794792 |
Product | peptide chain release factor 1 |
Protein accession | YP_002946085 |
Protein GI | 239817175 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0216] Protein chain release factor A |
TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAGACCT TTCTGCGCCA CCAACTCGAA CGCTATGCCC AGCGCCTGGG CGAACTCGAC TTCCTGCTTT CGCGCGAAGA CATCATGAGC GACATGGCTC AGTACCGCAC CATCTCGCGC GAGCACGCCG AGATCACGCA GATCGCGGGC CGCTACGAGC GCTACAAGCA GCGCGAAGCC GACATCGCCG GCGCGGCCGA AATGCTCGAA GACCCCGACA TGGCCGAGAT GGCCCGCGAA GAAATCGCCG CCGCGCAGGC CGAGCTCGTG CAGCTCGAGG AAGAGCTGCA GCGCCTGCTG CTGCCCAAGG ATCCGGACGA CGCGCGCAAC GCCTTCCTCG AAATCCGCGC GGGCACCGGC GGCGACGAGT CGGCGCTGTT CGCGGGCGAC CTGCTGCGCA TGTACACGCG CTACTGCGAG CGCGCCGGCT GGCGCTGCGA AGTGGTGAGC GAGAGCGAGA GCGAGCTCGG CGGCTACAAG GAAGTGGTGA TCCGCATCGC CGGCAACGAC GTCTTCGGCC GCCTGCGCTT CGAATCGGGC GGCCACCGCG TGCAGCGCGT GCCGGCCACC GAGACCCAGG GCCGCATCCA CACCAGCGCC TGCACCGTCG CCGTGCTGGC CGAGCCCGAC GAAACCGTGG CAGTGCAGAT CAACCCGGCC GACCTGCGCA TCGACACCTA CCGCGCGAGC GGCGCCGGCG GCCAGCACAT CAACAAGACC GACTCGGCCG TGCGCATCAC GCACATTCCA ACGGGCATCG TGGCCGAGTG CCAGGACGAC CGCAGCCAGC ACCGCAACAA GGCCAAGGCG CTGCAGGTGC TGTCCGCGCG CATCCAGGAA AAGGACCGCA GCGAGCGCGC CGCCAAGGAC GCCGCCATGC GCAAGGGCCT GATCGGCAGC GGCGACCGCT CCGACCGCAT CCGCACCTAC AACTTCCCGC AGGGCCGGCT CACCGACCAC CGCATCAACC TCACGCTCTA CAAGCTGCAG GCCATCATGG AAGGCGACCT CGGCGACGTG CTCGACGCGC TGCGCGCCGC GCGCGAGGCC GAGCAGCTGG CCGAACTCGA ATCGAGCCTG CCGGCATGA
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Protein sequence | MKTFLRHQLE RYAQRLGELD FLLSREDIMS DMAQYRTISR EHAEITQIAG RYERYKQREA DIAGAAEMLE DPDMAEMARE EIAAAQAELV QLEEELQRLL LPKDPDDARN AFLEIRAGTG GDESALFAGD LLRMYTRYCE RAGWRCEVVS ESESELGGYK EVVIRIAGND VFGRLRFESG GHRVQRVPAT ETQGRIHTSA CTVAVLAEPD ETVAVQINPA DLRIDTYRAS GAGGQHINKT DSAVRITHIP TGIVAECQDD RSQHRNKAKA LQVLSARIQE KDRSERAAKD AAMRKGLIGS GDRSDRIRTY NFPQGRLTDH RINLTLYKLQ AIMEGDLGDV LDALRAAREA EQLAELESSL PA
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