| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4200 |
|---|
| Symbol | |
|---|
| ID | 7971937 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4443296 |
|---|
| End bp | 4444009 |
|---|
| Gene Length | 714 bp |
|---|
| Protein Length | 237 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644794786 |
|---|
| Product | flagella basal body P-ring formation protein FlgA |
|---|
| Protein accession | YP_002946079 |
|---|
| Protein GI | 239817169 |
|---|
| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1261] Flagellar basal body P-ring biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR03170] flagella basal body P-ring formation protein FlgA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAAAA TCCCTTGCCG CCCACGCCGC CTCAAGCTCG TGCTGCCTGC CCTGGCGGCC
GGACTGGGCG CGGCGATGTG CGTGGCCGCG GCGCCGCTCA CGGGCGATGC GCGCGCCGCC
GTCGACCGGC TGCTGCAGGC CCAGAGCGCC GGACTCCCGG GCAAGGTCGG CATCCGCGTC
GAGGCGCCGG CATCGGGCCC GCTGCCCGCC TGCGATGCGC TCGAGGCCTT CCTGCCGCGC
GGCGCCGCGG CGTGGGGCCG GGTGTCGGTC GGCCTGCGCT GCCACTCGGA GCAAAAGCCC
TGGACGCGCT ATGTGCTGGC CCATGTGGCG GTCGAGGGGC GCTACCTGGT GGCCGCGCGC
AACATCGATA CCGGCCAGGC CCTGGGCGCG GGCGACTTCA TCGCCCGCAA TGGCGATCTC
ACCGCCCTGC CGCGCTCGGT CGTGACCGAC CTTGCCGAAC TGCAGGGCGT GGTGGCCGCC
AACCGCATCG CGTCCGGCGC GCCGCTCAGG CGCGAACTGA TGCGCGGCGT GGCCGTGATC
CAGCAGGGCC AGACCATCAA GGTCGTTGCC GAAGGCCCGG GCTATGTGGT CAGCACCGAA
GCACGCGCGA TGAGCAGTGC CAGCGCCGGT GCGGCCGTGC GGGCCAGGAC CGTGGACGGC
CGCATGGTCA GCGGCGTGGC CGACGAGGAA GGGCAGGTCC GCCTGCCGCA GTAG
|
|---|
| Protein sequence | MEKIPCRPRR LKLVLPALAA GLGAAMCVAA APLTGDARAA VDRLLQAQSA GLPGKVGIRV
EAPASGPLPA CDALEAFLPR GAAAWGRVSV GLRCHSEQKP WTRYVLAHVA VEGRYLVAAR
NIDTGQALGA GDFIARNGDL TALPRSVVTD LAELQGVVAA NRIASGAPLR RELMRGVAVI
QQGQTIKVVA EGPGYVVSTE ARAMSSASAG AAVRARTVDG RMVSGVADEE GQVRLPQ
|
|---|
| |