Gene Vapar_4197 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4197 
Symbol 
ID7971934 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp4441575 
End bp4442261 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content69% 
IMG OID644794783 
Productflagellar hook capping protein 
Protein accessionYP_002946076 
Protein GI239817166 
COG category[N] Cell motility 
COG ID[COG1843] Flagellar hook capping protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCATTT CCGACACCTC TTCCATCTCC GGGCTCAACG CAGCCACCGC CGCGTCGAGC 
GCCGGCAACG TCTCGGGAGC GGACAGCGAG CAGCGCTTCC TCAAGCTGCT GGTGACGCAG 
CTCAACAACC AGGACCCGCT CAACCCGATG GAGAACGCCG AGCTCACGTC GCAGCTCGCG 
CAGATGAGCA CCGTGAGCGG CATCGAGCGG CTCAACACCG CGCTCAGCGG ACTGGTGAAC 
CAGACCGGCG CCAACCAGGT GCTGCAGGCG GCATCGCTCA TTGGCTACAA CGTGCTGTCG 
CCCGGCAATG CTCTCAGCAC CTCCGAGCCC AAGGCCGGCG AGGCGCCGGC GGCCGTGCCC 
TTTGCCGTGC AGCTGCCGGC CACCGCCGGC ACCGTCGAAG TGAAGATCGT CAATGCCGCG 
GGCAACACCG TGCGCACCTT GACGCTCGGC CCGATGACCG AAGGCGTCAA CGCCGTCAGC 
TGGGACGGCA AGGCCGACGA CGGCAGCACG GCCCCGGCGG GCGCCTACAG CTTCAGCGTC 
GCGGCCGCCA ACAACGGCAC GCGCGTGGAG GCCACGTCGC TGGTCTTCTC GCAGGTGGCC 
GCCGTCAAGC AGGGCGCCAG CGGCGTCACG CTCGAACTGA TGTCGGGCCA GAGCATCGGC 
CTGGCCGACG TGCGCATGTT CCTCTGA
 
Protein sequence
MAISDTSSIS GLNAATAASS AGNVSGADSE QRFLKLLVTQ LNNQDPLNPM ENAELTSQLA 
QMSTVSGIER LNTALSGLVN QTGANQVLQA ASLIGYNVLS PGNALSTSEP KAGEAPAAVP 
FAVQLPATAG TVEVKIVNAA GNTVRTLTLG PMTEGVNAVS WDGKADDGST APAGAYSFSV 
AAANNGTRVE ATSLVFSQVA AVKQGASGVT LELMSGQSIG LADVRMFL