| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4196 |
|---|
| Symbol | |
|---|
| ID | 7971933 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4440268 |
|---|
| End bp | 4441482 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644794782 |
|---|
| Product | flagellar basal body FlaE domain protein |
|---|
| Protein accession | YP_002946075 |
|---|
| Protein GI | 239817165 |
|---|
| COG category | [N] Cell motility |
|---|
| COG ID | [COG1749] Flagellar hook protein FlgE |
|---|
| TIGRFAM ID | [TIGR03506] fagellar hook-basal body proteins |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCTTTT CCCAAGGCAT CAGCGGCCTG TCCGCAGCCG CCGCCAACCT CGACGTCATC
GGCAACAACA TCGCCAACTC GGGCACGGTC GGCTTCAAGT CGGGCGCGGC AACCTTCCAG
GACGTGTATG CGGGCTCGCG CGTCGGCCTG GGCGTGGCGG TGTCGGGCAT CGTGCAGAAC
TTCACGCAGG GCTCGGTGCA GACCAGCAGC CGGCCGCTGG ACGTGGCGAT CCTCAACGGC
GACGGCTTCT TCCGCCTCAG CAGCCCGAGC GGCGAGGTGA TGTATTCGCG CAATGGCCAG
TTCACGCGCG ACAAGGACGG CTTCATCGTC AACGCCGCGG GCCTGCGCCT GACGGGCTAC
GGCGTCTCCG CCACCGGCGG CCTGGACGGC GGCACGCCGG GCCCGCTGCA GGTCCAGACC
ACGGCCATGA GCCCGAAGGC GACCACCGCC ATCAACGCCA CCTTCAATCT GGACGCGCGC
GGCACGGTGC CCACCAAGAC GCCGTTCTCC GCCACCGATT CGGCCACCTT CAACTATTCG
AACGCGCTCG GCCCGGTGTT CGATTCGCTC GGCAATCCGC ACGAGCTCGG CGTCTTCTTC
GTGAAGACCG GCGCCAATGC CTGGGACGTG TACGGCGCGG CCGACGGCAG CGCGCTCAAT
GGCGGCGCGC CGATCTCGAC GATGAGCTTC GACGGCAACG GCAACCTGCT CACGCCGGCC
GGCGGCAAGC TGACGCTGCC CACGATGAAT TTCGGCAACG GCTCGGTGGC GCTCAACGCC
ACGGTGGACC TTTCGGGCAC CACGCAGTTC GGCAACGTCA ACGAGATCAA GACGCTCAAG
CAGGACGGCT ACACCTCCGG CACGCTGACC TCGTTCTCGA TCAACCCCGA CGGCACCATC
ACCGGCAAGT TCTCCAACGA ACAGACCACG CTGATGGGCC AGGTGGTGCT GACCTCCTTC
GCCAACCCCA ACGGCCTGGA GCCGATGGGC GAGAACGTCT GGGGCGAAAC GCTGGCCTCG
GGCCAGCCGC TCACCGGCAC GCCGGGCGCG GGCACCAAGC AGGGCTCGCT CGCCTCGGGC
GCGCTGGAGG CATCGAACGT CGACCTGACC TCCGAGCTCG TCAACCTGAT CGTCGCGCAG
CGCAGCTACC AGGCCAATGC GCAGACGGTG AAGACGCAGG ATCAGGTCGT CCAGACCCTG
ATCAACATCC GCTGA
|
|---|
| Protein sequence | MGFSQGISGL SAAAANLDVI GNNIANSGTV GFKSGAATFQ DVYAGSRVGL GVAVSGIVQN
FTQGSVQTSS RPLDVAILNG DGFFRLSSPS GEVMYSRNGQ FTRDKDGFIV NAAGLRLTGY
GVSATGGLDG GTPGPLQVQT TAMSPKATTA INATFNLDAR GTVPTKTPFS ATDSATFNYS
NALGPVFDSL GNPHELGVFF VKTGANAWDV YGAADGSALN GGAPISTMSF DGNGNLLTPA
GGKLTLPTMN FGNGSVALNA TVDLSGTTQF GNVNEIKTLK QDGYTSGTLT SFSINPDGTI
TGKFSNEQTT LMGQVVLTSF ANPNGLEPMG ENVWGETLAS GQPLTGTPGA GTKQGSLASG
ALEASNVDLT SELVNLIVAQ RSYQANAQTV KTQDQVVQTL INIR
|
|---|
| |