Gene Vapar_4182 details

Gene Information

• Locus tag: Vapar_4182
• Symbol: flgK
• ID: 7971919
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 4422042
• End bp: 4424000
• Gene Length: 1959 bp
• Protein Length: 652 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644794768
• Product: flagellar hook-associated protein FlgK
• Protein accession: YP_002946061
• Protein GI: 239817151
• COG category: [N] Cell motility
• COG ID: [COG1256] Flagellar hook-associated protein
• TIGRFAM ID: [TIGR02492] flagellar hook-associated protein FlgK

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGATGT TCCAAACGGG CCTGTCCGGC CTGAGCGTCG CGCGATCCGC GCTCATGACG 
ACGGCCCACA ACACGGCCAA CGTGTACACC GCCGGCTACA GCCGGCAGAC CGCGCTGGTC 
TCGTCCAACG GCGGCACGAC GACCGGTGCG GGGTTCATCG GGAACGGCGC ACGCGTCACC 
ACGGTGCAGC GCAGCTACGA CGGCTATCTC ACGGCCCAGC TCAACGGCGC CGAAGCCGCG 
GGCGCGGCGC TCGCGAGCTA CGGATCGCAG ATCAACCGCA TCGACTCGCT GCTGGCCGAC 
AAGACCGCGG GCCTCACGCC GCTGATGCAG AGCTTCTTTG CCAGCGTGCA GGGCGTGGCC 
AACACGCCGG CCGATCCGGC GGCGCGCCAG CAGCTCATCA GCGCGGCGCA GACGCTGGCC 
AACAAGTTCC GCGCCACCGA CCAGTACCTC ACCGACCTGA ACGGTTCGGT CAACGACCAG 
ATCGAAGGCA GCACCGGGCA GATCAACACC TATGCCAAGC AGATAGCGAG CCTGAACCAG 
CAGATCAGCC AGCTCAGCGC CATGGCCGGC GGCCAGCCGC CCAACGACCT GATGGACCAG 
CGCGACCAGC TGGTGAGCGA GCTCGGCAAG ATCGTGGGCG TGAAGGTGCT GGAGCAGGAC 
AGCGGCCAGT ACAACGTCTT CATCGGCAAC GGCCAGACGC TGGTGCTGGG CGACCGGGCC 
GCGCAGCTGC AGGCGGTGTC GTCCGCCGCC GATCCCACGC GCAAGGCGGT GGCGCTGGTC 
GGGCTCACCG GCACGGTTTC CGAACTCAAC GACGACGTGA TTGCTGGCGG ATCGCTGGGC 
GGCCTGCTGG CCTTCCGCGC CGAGACGCTC ACCCCCACGC AGAACGCCGT CGGCCGCCTG 
GCCATGGCGC TGGGCAGCGA GTTCAACGAG CAGCACAAGC TGGGCGTCGA CCTGAACGGC 
GTGCTGGGCA CCGACTTCTT CTCGCAAGCC ACGGCGGGCG TGTTTTCCAA GGCGCGCAAC 
GGGGGCAACA TGGTGCTCGG TGCCAGCGTG GCCGACACCT CGCAGCTCAC GACCAGCGAC 
TATTCGGTGC AGGTGAAGGA CGTGGCTGGC ACGCTCACCT ACAGCGTCAC GCGGCTGTCG 
GACAAGCAGC CGATGGGCGA CTTCACCAGC TTCCCCGCCA GCTTCGACGG CGTGAGCCTC 
TCGCCGGCCA GCGGCACCGC GCAGGCGGGC GATTCCTTCC TGGTGCAGCC GACGCGCACC 
GGCGCGCGCG ACATGGACGT GCTGGTGCGC GACACCGCCA AGGTGGCCGC CGCGTCGCCG 
CTGGCCACGG GCAAGGCGGT GGGCAACAAG GGCACCGGCG CGCTGAGCCC GGCCGTGGTC 
GATTCGGGCT ACCTGGCCAC GCCGCTCGCC GGCACGGTCA CGCTCGCCTA CGATGCCGCG 
GCCAACACGC TGTCGGGCTT TCCGGCGACC TCCGCCGTGA CGGTGACGTT GGCCGACGGC 
ACATCGACCA ACTATGCCGC CGGCACGGCC GTGCCCTACA CCGCGGGCGC TTCCATCCGC 
TTCGACGGCA TCGAGGTCAA GCTCAGCGGC GCGCCTGCCG ATGGCGACAC CTTCACCATC 
GGCAAGAACG CGGGCGGCGT GTCCGACGGC AGCAACGCGC TGCGTCTTGG CGCGCTGCAG 
CGCAAGACCG CGATGGACGG CGGCACCTCC ACCTTCAACG GCGCCTTCGC CAAGCTGGTG 
AGCGAGGTGG GCAACCGCGC CATGGAAATC CGCGTGGCCT CGGCCACGCA GGAAGGCGTG 
ACGGGCCAGA TCCGCGCGAG CCGCGATTCG ATCTCGGGCG TGAACCAGGA TGAGGAAACC 
GCCAACCTGC TGATGTACCA GCAGATGTAC CAGGCCAATG CCAAGGTGAT CCAGACCGCG 
TCGACCATGT TCGACGCGAT CCTGGGCATC CGCGGCTGA 

 

Protein sequence

MSMFQTGLSG LSVARSALMT TAHNTANVYT AGYSRQTALV SSNGGTTTGA GFIGNGARVT 
TVQRSYDGYL TAQLNGAEAA GAALASYGSQ INRIDSLLAD KTAGLTPLMQ SFFASVQGVA 
NTPADPAARQ QLISAAQTLA NKFRATDQYL TDLNGSVNDQ IEGSTGQINT YAKQIASLNQ 
QISQLSAMAG GQPPNDLMDQ RDQLVSELGK IVGVKVLEQD SGQYNVFIGN GQTLVLGDRA 
AQLQAVSSAA DPTRKAVALV GLTGTVSELN DDVIAGGSLG GLLAFRAETL TPTQNAVGRL 
AMALGSEFNE QHKLGVDLNG VLGTDFFSQA TAGVFSKARN GGNMVLGASV ADTSQLTTSD 
YSVQVKDVAG TLTYSVTRLS DKQPMGDFTS FPASFDGVSL SPASGTAQAG DSFLVQPTRT 
GARDMDVLVR DTAKVAAASP LATGKAVGNK GTGALSPAVV DSGYLATPLA GTVTLAYDAA 
ANTLSGFPAT SAVTVTLADG TSTNYAAGTA VPYTAGASIR FDGIEVKLSG APADGDTFTI 
GKNAGGVSDG SNALRLGALQ RKTAMDGGTS TFNGAFAKLV SEVGNRAMEI RVASATQEGV 
TGQIRASRDS ISGVNQDEET ANLLMYQQMY QANAKVIQTA STMFDAILGI RG