Gene Vapar_4177 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4177 
Symbol 
ID7971914 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp4418438 
End bp4418926 
Gene Length489 bp 
Protein Length162 aa 
Translation table11 
GC content76% 
IMG OID644794763 
Productflagellar biosynthesis protein FliO 
Protein accessionYP_002946056 
Protein GI239817146 
COG category[N] Cell motility 
COG ID[COG3190] Flagellar biogenesis protein 
TIGRFAM ID[TIGR03500] flagellar biosynthetic protein FliO 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCTCT TCGCCCGCCG GCTGCGGCAG GCCGCGGCTT CGTTCGCGGC CGCGGCCTGC 
GTTGCCGCCC ACGCGGCGCT GCCGACCGTG CCCTCGCCCG TGGAGGCCGC CGCGCCGGCC 
GTGGGCGCCT CCAGCCTGCT GCAGGCCGGC TTCGGCATGT TCACGGTCCT GGGCCTGATC 
TTCCTGTGCG CCTGGGCCGC GCGCCGCTTC GGCCTGCAGC GCCTGGGCGG CGGCCAATCG 
GTGAAGGTGG TCTCCAGCAC CATGGTCGGC CAGCGCGAGC GCGTGGTCGT GGTCGAGGTC 
GGCGGCACCT GGCTGGTGCT GGGCGTTGCG GCCGGCCGCG TCAATGCGCT GCATTCGCTG 
CCGGCACAGG TTCTGCCCAC GGCACCGCCG GCCAGCGCCA TGCCCGACGC CCGCCTGGCC 
GGCGCGGCGG GCCTGTTCGC CCAGAAGCTG CGCGACTCGC TCGGCCTCAC GCAGCGGCCC 
CATCCATGA
 
Protein sequence
MNLFARRLRQ AAASFAAAAC VAAHAALPTV PSPVEAAAPA VGASSLLQAG FGMFTVLGLI 
FLCAWAARRF GLQRLGGGQS VKVVSSTMVG QRERVVVVEV GGTWLVLGVA AGRVNALHSL 
PAQVLPTAPP ASAMPDARLA GAAGLFAQKL RDSLGLTQRP HP