Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4176 |
Symbol | |
ID | 7971913 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4417974 |
End bp | 4418441 |
Gene Length | 468 bp |
Protein Length | 155 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644794762 |
Product | flagellar motor switch protein FliN |
Protein accession | YP_002946055 |
Protein GI | 239817145 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1886] Flagellar motor switch/type III secretory pathway protein |
TIGRFAM ID | [TIGR02480] flagellar motor switch protein FliN |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGACA ACACCCCATC CACCAGCGAT GCGGACGACT GGGCCAGCGC GCTGGCCGAG CAGACCGCGG CCTCCGCGCC CGCGCCCGCC TTCGCCCCCG CCGCCCCGCC GGCGATCGCT CCCGCTCCCG CACCGGCTGC CGCTCCAGCG GGCAGCCGCG TGTTCCAGCC GCTGCAGGCC ATGGCGACCG GCGCCGGCTC GCCGGTGGAC GTGGAGCGCA TCCTCGACGT GCCGGTGCAG CTCACGGCCG AGCTCGGCCG CACGCGCATC ACCATCAAGA GCCTGCTGCA GCTCTCGCAG GGCTCGGTGG TCGAGCTCGA CGGCCTGGCC GGCCAGCCGC TGGACGTGCT GATCAACGGC TACCTGATCG CGCAGGGCGA AGTGGTGGTG GTCAACGAGA AGTACGGCAT CCGCCTGACC GACATCGTCA CGCCCTCCGA GCGCATGCAG AAGCTCGGCC GGTCATGA
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Protein sequence | MTDNTPSTSD ADDWASALAE QTAASAPAPA FAPAAPPAIA PAPAPAAAPA GSRVFQPLQA MATGAGSPVD VERILDVPVQ LTAELGRTRI TIKSLLQLSQ GSVVELDGLA GQPLDVLING YLIAQGEVVV VNEKYGIRLT DIVTPSERMQ KLGRS
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