Gene Vapar_4172 details

Gene Information

• Locus tag: Vapar_4172
• ID: 7971909
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: +
• Start bp: 4414534
• End bp: 4414989
• Gene Length: 456 bp
• Protein Length: 151 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 644794758
• Product: flagellar export protein FliJ
• Protein accession: YP_002946051
• Protein GI: 239817141
• COG category: [N] Cell motility; [O] Posttranslational modification, protein turnover, chaperones; [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG2882] Flagellar biosynthesis chaperone
• TIGRFAM ID: [TIGR02473] flagellar export protein FliJ

Plasmid Coverage information

• Num covering plasmid clones: 13
• Plasmid unclonability p-value: 0.911153
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCGCACA AGCTTCCGCT CGACACGCTC ACCGACCTCG CCCGCACACG GACCGACGAT 
GCGGCGCGCC AGCTCGGCCT GCTGCAGAAC GCGCAGGTCA GCGCCCACCA AAAGCTGGAG 
CTGCTGCTGC AGTACCGCCA GGACTACAGC GACCAGCTGC AGGTGCTGAT GGAGAACGGC 
CTGCCCTCGG CCCAGTGGCA CAACTACCGC AACTTCCTCG GCACGCTCGA CGGCGCCATC 
CAGCAGCAGC AGGCCATCGC CGCGCAGGCG GCCAGCCGGC TCGACCATGG CCGCAGCGAA 
TGGCAGCAGC ACAAGCGGCG CCTGAACTCC TTCGACGCGC TGGCCGAACG CGCACGGCGG 
CAGGAACTCG TGGTCGGCGC GCGGCGCGAG CAGCGCGACA GCGACGAGCG CACGGCACGC 
AAGTTCTTCG ACCGCGCCTC CCAACCGACA CCCTGA 

 

Protein sequence

MPHKLPLDTL TDLARTRTDD AARQLGLLQN AQVSAHQKLE LLLQYRQDYS DQLQVLMENG 
LPSAQWHNYR NFLGTLDGAI QQQQAIAAQA ASRLDHGRSE WQQHKRRLNS FDALAERARR 
QELVVGARRE QRDSDERTAR KFFDRASQPT P