| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4171 |
|---|
| Symbol | |
|---|
| ID | 7971908 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4413071 |
|---|
| End bp | 4414507 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644794757 |
|---|
| Product | ATPase, FliI/YscN family |
|---|
| Protein accession | YP_002946050 |
|---|
| Protein GI | 239817140 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1157] Flagellar biosynthesis/type III secretory pathway ATPase |
|---|
| TIGRFAM ID | [TIGR01026] ATPase FliI/YscN family
[TIGR03496] flagellar protein export ATPase FliI |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.763526 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGCCA CCGCCAACAC CGCCGCGCCC GGCGCCGTCA ACCCGCACCT CAAGTCCTGG
CTCGGCACGC TCGCGCAGGC CCGCGGCGAG GTCGGCCTGT GCGCGACCAT CGCCACCTCG
GGCCGCCTGA CGCGCGCCGT CGGCCTGGTG CTGGAGGCCG TGGGCCTGCA GCTGCCGGTC
GGCAGCGACT GCCTGATCGA ACTGCCGCCC GGCTATCCGC AGCGCCATGC CGAGGCCGAA
GTGGTCGGCT TTGCCGGCGA CCGCCTGTTC CTGATGCCGC AAAGCGAAGT GGCCGGCCTG
CTGCCGGGTG CGCGCGTGTT TGCGCGGCCC GGTCCTGCGC AGTTTGCGGG CGGCGCTTCC
GGCGATGCCC ACACCAAGCG GCTGCCGGTG GGCGAAGGCA TGCTCGGCCG CGTGGTCGAT
GCCGCCGGCC GGCCGCTCGA CGGGCTCGGC CCGCTCGACG TGAGCCGCCG GGTGCCGCTG
GGCGCGCCGC CGATCAATCC GCTGGCGCGT GCGCCGATCG ATTCGGTGCT CGACGTGGGC
GTGCGCGCCA TCAACGCCAT GCTCACCGTG GGCCGCGGCC AGCGCATGGG CCTGTTCGCG
GGCTCGGGCG TCGGCAAGAG CGTGCTGCTG GGCATGATGG CGCGCTACAC CAGCGCCGAG
GTGATCGTGG TCGGCCTCAT CGGCGAACGC GGCCGCGAGG TCAAGGACTT CATCGAGAAC
ACGCTGGGCG AGGAAGGCCT GGCGCGCTCG GTGGTGGTGG CCGCGCCGGC CGACAACTCG
CCGCTGCTGC GGCTGCAAGG TGCGGCCTAT GCCACTTGCC TGGCCGAGTA CTTCCGCGAC
CAGGGCCGCG ACGTGCTGCT GATCATGGAT TCGCTCACGC GCTATGCGAT GGCGCAGCGC
GAGATCGCAT TGGCCGTGGG CGAGCCGCCC GCCACCAAGG GCTACCCGCC TTCGGTGTTC
GCCAAGCTGC CCGCGCTGGT GGAGCGCGCC GGCAACGGCG CGCGCGACGC CAACGGCCGC
GGCGGCTCGA TCACGGCCTT CTACACCGTG CTGTCCGAAG GCGACGACCA GCAGGACCCG
ATCGCCGATT CGGCCCGCGC CATCCTCGAC GGCCACGTGG TGCTGTCGCG CACGCTGGCC
GAGGCCGGCC ACTACCCGGC GATCGACATC GAGGCCTCCA TCAGCCGCGC GATGACGGCG
CTGATCGAGC CCTCGCAGTT CGACACCGTG CGCCGCTTCA AGCAGGCGCT CTCGCGCTAC
CAGCGCAACC GCGACCTCAT CAGCGTCGGC GCCTATGCGG CCGGCCACGA CCCGCAGCTC
GACCAGGCCA TTGCGCTCTA TCCGCGCATC GAGGCCTTCC TGCAGCAATC GATGCACGAG
CGCTGCGACT ACGCCGCGTC CATCGAGCGC ATGGGCAGCC TCTTCGAATC CGCCTGA
|
|---|
| Protein sequence | MQATANTAAP GAVNPHLKSW LGTLAQARGE VGLCATIATS GRLTRAVGLV LEAVGLQLPV
GSDCLIELPP GYPQRHAEAE VVGFAGDRLF LMPQSEVAGL LPGARVFARP GPAQFAGGAS
GDAHTKRLPV GEGMLGRVVD AAGRPLDGLG PLDVSRRVPL GAPPINPLAR APIDSVLDVG
VRAINAMLTV GRGQRMGLFA GSGVGKSVLL GMMARYTSAE VIVVGLIGER GREVKDFIEN
TLGEEGLARS VVVAAPADNS PLLRLQGAAY ATCLAEYFRD QGRDVLLIMD SLTRYAMAQR
EIALAVGEPP ATKGYPPSVF AKLPALVERA GNGARDANGR GGSITAFYTV LSEGDDQQDP
IADSARAILD GHVVLSRTLA EAGHYPAIDI EASISRAMTA LIEPSQFDTV RRFKQALSRY
QRNRDLISVG AYAAGHDPQL DQAIALYPRI EAFLQQSMHE RCDYAASIER MGSLFESA
|
|---|
| |