| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4168 |
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| Symbol | fliF |
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| ID | 7971905 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4409692 |
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| End bp | 4411374 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794754 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_002946047 |
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| Protein GI | 239817137 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTCGG CGGCCCCCGC GGGCACCGGC CCGGCGCCCT CGCCCGCCTC CGGCCTTGCC
GAGCGCCTGC GCACCCAGCC GAAGCTGCCG CTGATCGCCG GCGCGGCCGC CATTGCCGCG
GCCGCCGCGG CGTTCCTGCT GTGGAGCCGC GCGCCCGACT ACGGCGTGCT CTACACCAAC
GTGACGGACC GCGACGGCGG CGCCATCATC GCGTCGCTGC AGCAGATGAA CGTGCCCTAC
AAGTTCGCCG AGGGCGGCGG CGCGATCCTG GTGGCGCGCG ACAGGGTGCC CGAAGTGCGC
CTGAAGCTCG CGTCGCAGGG CCTGCCCAAG GGCGGCGGGG TCGGCTTCGA GCTGATGGAC
AACCAGAAGT TCGGCACCAG CAACTTCGCC GAACAGGTCA ACTACCAGCG CGGGCTCGAA
GGCGAGCTGG CGCGCTCGGT CGAATCGATC GGCTCGGTGG AATCGGCGCG CATCCACCTG
GCGCTGCCCA AGCCTTCGCT CTTCGTGCGC GACCAGAAGA AGCCCTCGGC CTCGGTGATC
CTGACGCTGC ACCGCGGCCG CAGCATCGAC GAGGGCCAGG TCAGCGCCAT CGTGCACATG
GTCTCCAGCA GCGTGCCCGA CCTGGACGCC AAGAGCGTGA CCGTGGTCGA CCAGCGCGGC
AACCTGCTGT CGGCCGCCAA TGCCGGCGCA CGCGGGCTGG ACGTGAGCCA GCTCAAGTAC
GCGCAGGAAA TCGAGCAGGG CTACATCCGC CGCATCGAGG CGATCCTGCA GCCCCTCGTG
GGCGCGAGCA ACGTGCGCGC GCAGGTGGCG GCCGAGATCG ACTTTTCCGT GGTCGAGCGC
ACCGAGGAAA GCTACAAGCC GAACCAGGAC CCGCGCGCCG CGGCCGTCCG CAGCCAGCAG
TCGAGCGAGT CGATGCAGCA GGGCGCCACG CCGCCGGGCG GCGTGCCGGG CGCCTTGTCG
AACCAGCCGC CGCAGACGCC GAGCGCGCCC ATCACCGCGC CGCCGAACGC CGCGGCGGCT
GCGCCGAAGG CCGCGGCAAC CGCCACGGCG GCCAGCACGG CACCGGGCAG TTCGCGCAAG
GACACGACGA CCAACTACGA GCTCGACCGT TCGATCCGCC ATGTGCAGCA GGGCGCGGGC
GGCGTGAAGC GGCTGTCGGT GGCCGTGGTG GTGAACCACC GCGACACCGC GGACAGCGCC
GGCAAGCCGG GCCAGCGCGC GCTCACGCCG GCCGAGATCG AGCAGATCCG CAACCTGGTC
AAGGAAGCGA TGGGCTTCAG CCAGGAGCGC GGCGACTCGC TCAACGTGGT CAACAGCGCC
TTCGCCCGCG AAGGCGGCGA CGCAGAAGCC GGGCCCGCGC TGCCGTTCTG GCGCGACCCC
GCCAACCTCG GGCTCGCCAT GAGCATCGCG CAGTACCTGC TGATGGCCGG CCTCGCGCTG
TTCGCCTGGT TCGCGGTGCT GCGGCCGCTG CTGCGCAAGC ACCTCGCGCC GCCCGCCGCC
GCGGTGCCCG AAGCGGCGCC GGCCGCCCCT GGCGCGGCCG ACGACGACGG AACGGCCGCG
CAGAACAACG CGCGGCTGCG CGAGATCGAG CGCCAGAAGG CCGACCTCGA CTACGCGCAC
CAGACCGCCG ACCAGGACCC GCGCCTGGTC GCCACGCTGA TCAAGCATTG GATGAATTCA
TGA
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| Protein sequence | MSSAAPAGTG PAPSPASGLA ERLRTQPKLP LIAGAAAIAA AAAAFLLWSR APDYGVLYTN
VTDRDGGAII ASLQQMNVPY KFAEGGGAIL VARDRVPEVR LKLASQGLPK GGGVGFELMD
NQKFGTSNFA EQVNYQRGLE GELARSVESI GSVESARIHL ALPKPSLFVR DQKKPSASVI
LTLHRGRSID EGQVSAIVHM VSSSVPDLDA KSVTVVDQRG NLLSAANAGA RGLDVSQLKY
AQEIEQGYIR RIEAILQPLV GASNVRAQVA AEIDFSVVER TEESYKPNQD PRAAAVRSQQ
SSESMQQGAT PPGGVPGALS NQPPQTPSAP ITAPPNAAAA APKAAATATA ASTAPGSSRK
DTTTNYELDR SIRHVQQGAG GVKRLSVAVV VNHRDTADSA GKPGQRALTP AEIEQIRNLV
KEAMGFSQER GDSLNVVNSA FAREGGDAEA GPALPFWRDP ANLGLAMSIA QYLLMAGLAL
FAWFAVLRPL LRKHLAPPAA AVPEAAPAAP GAADDDGTAA QNNARLREIE RQKADLDYAH
QTADQDPRLV ATLIKHWMNS
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