| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4165 |
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| Symbol | |
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| ID | 7971902 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4406075 |
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| End bp | 4407523 |
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| Gene Length | 1449 bp |
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| Protein Length | 482 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794751 |
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| Product | flagellar hook-associated 2 domain protein |
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| Protein accession | YP_002946044 |
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| Protein GI | 239817134 |
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| COG category | [N] Cell motility |
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| COG ID | [COG1345] Flagellar capping protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCATCGA TCAGCAGCCT GGGCGTGGGC TCCAACCTCG ACCTGAGCAC CTTGCTCTCG
CAGCTGCAGA CGGCGGAGAG CCAGCCGCTG GTGGCGCTGC AGCAGCGCCA GGTGAGCTAC
ACGAGCAAGC TCTCGGCCTA CGGCACGCTG CAAAGCTCGC TGGGCACGCT GCAGGCCGCG
GCCAAGAAGC TCTCGGACCC GGCGCTGTTC CAGGGCGTGA AGGCCGTCTC CAGCGCAACC
GACGTGCTGA CCGCGGCAGC CGCAGGCACG GCCGCGGCCG GCACCTATGC CATCGACGTG
ACGCAGCTGG CGCAGCCGCA GTCGCTGGTG GCGGCGGGCC AGGCGAGCAC CACCGCCGCC
ATCGGCAGCG GAACCATCAC CATCGATTTC GGCGCCATCA CGGGCGGCAC GCTCGATGCG
GCCACCGGCA CCTACAGCGG CTCCGGCTTC ACCAAGGACG CCACCCGCAC CGCCGTGCCG
ATCTCCATCG ACAGCAGCAA CAACACGCTG GCGGGCATCC GCGACGCCAT CAACGCCGCC
AAGGCCGGTG TCTCGGCCAG CATCGTGAAC GACGGCAGCG GCACGCCCAA CCGGCTGGTG
CTGACCTCCT CGCAGACCGG CGAGGCCTCG AGCATGCGCG TCTCGGTGGC GGGCGATGCA
GCGCTGCAGA ACCTGCTGAA CAACGATCCC GCGGGCACGC AGAACCTGCG GCAGACGGTG
GCGGGGCAGA ACGCCAAGCT CAGCGTCAAC GGCATTGCCG TGACCAGCGC GAGCAACACC
GTCAAGGAAG CCATCCAGGG CACCACGCTG ACGCTGCTCA AGACCGGCAG CAGCAGCCTC
TCGACCCAGG CCGACACGGC CGCGGTGGAG ACGGCCATCA ACGATTTCGT CAAGGCCTAC
AACAGCCTGC AGGCCACCGC CAACACGCTG ACCGCCTACA ACCAGGACTC CAAGACCGGC
GCCGCGCTCG TCGGCGATTC GACGCTGCGC AACCTGCAGA CGCGCATCCG GCAGGCGCTC
ACCACGCCGC AAGCCGGCGG CCCCGACGAC ATGAAGGTGC TGTCCGAGAT CGGCGTCGCC
TTCCAGAAGG ACGGCACCAT GGCGGTCGAT TCGACCAAGC TCAAGTCGGC CCTGGCCAGC
AACCTGGCGG GCGTCTCGGG GCTGTTCGCG AGCGCCACCG GCAGCACCGC CGGCTACGGC
AAGCAGCTGA GCGCGCTGGT GGACGACCTC ACCTCCACCG GCGGCGCGCT CAAGGTCGCG
TCCGATGGCA TGGCCGCCTC GCTCAAGCAG CTCGACGAGC AGTACGCCGA CATGAAGACG
CGGGTGGACG CCAAGGTGGA GCGCTATCGC ACGCAGTTCA CCCAGCTCGA CCTGCTCATG
AGCCAGATGA ACCGGACCAG CAGCTATCTC ACACAGCAAT TCGCGAGCAT GCAAAGCAGC
AGCAAGTAG
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| Protein sequence | MASISSLGVG SNLDLSTLLS QLQTAESQPL VALQQRQVSY TSKLSAYGTL QSSLGTLQAA
AKKLSDPALF QGVKAVSSAT DVLTAAAAGT AAAGTYAIDV TQLAQPQSLV AAGQASTTAA
IGSGTITIDF GAITGGTLDA ATGTYSGSGF TKDATRTAVP ISIDSSNNTL AGIRDAINAA
KAGVSASIVN DGSGTPNRLV LTSSQTGEAS SMRVSVAGDA ALQNLLNNDP AGTQNLRQTV
AGQNAKLSVN GIAVTSASNT VKEAIQGTTL TLLKTGSSSL STQADTAAVE TAINDFVKAY
NSLQATANTL TAYNQDSKTG AALVGDSTLR NLQTRIRQAL TTPQAGGPDD MKVLSEIGVA
FQKDGTMAVD STKLKSALAS NLAGVSGLFA SATGSTAGYG KQLSALVDDL TSTGGALKVA
SDGMAASLKQ LDEQYADMKT RVDAKVERYR TQFTQLDLLM SQMNRTSSYL TQQFASMQSS
SK
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