| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4164 |
|---|
| Symbol | |
|---|
| ID | 7971901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4405629 |
|---|
| End bp | 4406051 |
|---|
| Gene Length | 423 bp |
|---|
| Protein Length | 140 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644794750 |
|---|
| Product | flagellar protein FliS |
|---|
| Protein accession | YP_002946043 |
|---|
| Protein GI | 239817133 |
|---|
| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1516] Flagellin-specific chaperone FliS |
|---|
| TIGRFAM ID | [TIGR00208] flagellar biosynthetic protein FliS |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTACACCC CCCACACCTT CAGGACCGGC GCCAGCGCGT ATGCGCACGT CGGCATGGAG
ACGCGCACCA TGAGCGCGTC GCCGCACCAG CTCATCGTCA TGCTGTTCGA CGGCGTCGTC
ACCAGCATCG GCATGGCCCG CCACCACATG GCCACCGGTG ACATGGCCGC CAAGGGCAAC
GCGATCTCCA AGGCCGTGAG CATCGTCGAC AACGGCCTGA AGGCCGCCCT CGATGCCAAG
GCCGCGGGCG CGGCCGGCGC CGAGCTGGTG GGCAATCTCT CGGCGCTGTA CGACTACGTC
ATCCGCCGGC TGCTCTATGC CAACCTGCAC AACGAGCCCA AGGCACTCGA CGAGGCCGAG
GCATTGCTCG AGAACGTCGC GTCCGCATGG CGCGAGATCG GCGGCGCCAG TGCCGGCAAT
TGA
|
|---|
| Protein sequence | MYTPHTFRTG ASAYAHVGME TRTMSASPHQ LIVMLFDGVV TSIGMARHHM ATGDMAAKGN
AISKAVSIVD NGLKAALDAK AAGAAGAELV GNLSALYDYV IRRLLYANLH NEPKALDEAE
ALLENVASAW REIGGASAGN
|
|---|
| |