| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4133 |
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| Symbol | |
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| ID | 7971870 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4373607 |
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| End bp | 4374839 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794719 |
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| Product | D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding |
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| Protein accession | YP_002946012 |
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| Protein GI | 239817102 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
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| TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAGCA AAACCTCTCT CGAAAAAAGC CGGATCAAGT TCCTTCTGCT CGAGGGCATC
CATCCTTCGG CGGTGGAGGT CCTGCGCGCC GCGGGCTACA CCAACATCGA GTCGCTGCCG
GGTGCGTTGC CCGATGCGGA GCTCAAGGCC AAGATCGCCG ACGTCCACTT CCTGGGCATC
CGCTCGCGCA CGCAGCTCAC GGCCGAGGTC TTCGCGGCCG CCCACAAGCT GGTGGCGGCG
GGGTGCTTCT GCATCGGCAC CAACCAGGTC GACCTGGAGG CCGCGCGCGA GCACGGCGTG
GCGGTGTTCA ACGCCCCGTA TTCCAACACC CGCTCGGTAG CCGAGCTGGT GCTGGCCGAA
GCCATCCTGC TGTTGCGCGG CGTGCCCGAG AAGAGCGCGG TCGCGCACCG CGGCGGCTGG
CTCAAGTCGG CCGAGAACGC CTTCGAGATC CGCGGCAAGA CGCTGGGCAT CGTGGGCTAC
GGCTCCATCG GCGCCCAGCT CTCGGTGCTG GCCGAGGCGC TGGGCATGAA GGTGGCGTTC
TACGATGTGG TGACCAAGCT GCCCCTGGGC AATGCGCACC AGGTGCGCGA ACTGCACCAG
TTGCTGGCCC AGAGCGACAT CGTGACCCTG CACGTGCCCG AGACGCAGGC CACCCAATGG
ATGATCGATA CGGCCGAAAT CGCCGCCATG AAGCCGGGCG CGATCCTGAT CAACGCCTCG
CGCGGCACGG TCGTGCGGAT CGAGCCGCTG GCCGAGGCGC TGAAGCAGAA GAAGCTGCTG
GGCGCCGCGA TCGACGTGTT CCCGGTCGAG CCGCGCAGCA ACAAGGACGA GTTCCAATCG
CCCTTGCGCG GGCTGGACAA CGTGATCCTC ACGCCCCACA TCGGCGGCTC GACGATGGAG
GCGCAGGCCA ACATCGGCCT GGAGGTGGCG GAAAAGCTGG TGAAGTACAG CGACAACGGC
ACCTCGACCT CGTCGGTCAA CTTTCCCGAG GTGGCGCTGC CGGCCCACCC CGGCAAGCAC
CGGCTGCTGC ACATCCACCG CAACGTGCCC GGCGTGCTGT CGGAGATCAA CAAGATCTTC
TCGGACAACA ACATCAACAT CTCCTCGCAG TTCCTGCAGA CCAACGAGAA GATCGGCTAC
GTGGTGATGG ACATCGACGC CGCGTATTCC GACCTGGCGC TGGAAAAGCT GGCCAAGGTG
AACGGCACGA TCCGCAGCCG CGTGCTGTTC TGA
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| Protein sequence | MSSKTSLEKS RIKFLLLEGI HPSAVEVLRA AGYTNIESLP GALPDAELKA KIADVHFLGI
RSRTQLTAEV FAAAHKLVAA GCFCIGTNQV DLEAAREHGV AVFNAPYSNT RSVAELVLAE
AILLLRGVPE KSAVAHRGGW LKSAENAFEI RGKTLGIVGY GSIGAQLSVL AEALGMKVAF
YDVVTKLPLG NAHQVRELHQ LLAQSDIVTL HVPETQATQW MIDTAEIAAM KPGAILINAS
RGTVVRIEPL AEALKQKKLL GAAIDVFPVE PRSNKDEFQS PLRGLDNVIL TPHIGGSTME
AQANIGLEVA EKLVKYSDNG TSTSSVNFPE VALPAHPGKH RLLHIHRNVP GVLSEINKIF
SDNNINISSQ FLQTNEKIGY VVMDIDAAYS DLALEKLAKV NGTIRSRVLF
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