Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4132 |
Symbol | |
ID | 7971869 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4369522 |
End bp | 4373400 |
Gene Length | 3879 bp |
Protein Length | 1292 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644794718 |
Product | FAD linked oxidase domain protein |
Protein accession | YP_002946011 |
Protein GI | 239817101 |
COG category | [C] Energy production and conversion |
COG ID | [COG0247] Fe-S oxidoreductase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.48543 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATGCTC CGACCGCGTT GACCACGCTG TTGTCGCAGG CCGCAGAGCC TGTACGACTG CGCGAGATCC CCTATAACTA CACCAGCTTT TCCGATCGAG AGATCGTGAT CCGCCTGCTG GGCGAGCGCG GCTGGGAACT GCTCCAGACC CTGCGCGCCG AGCGCCGCAC CGGCCGGTCG GCGCGCATGC TCTACGAAGT GCTCGGCGAC ATCTGGGTGG TCCAGCGCAA CCCCTACCTC GTCGACGACC TGCTCGACAA CCCGCGCCGC CGCGGCCAGC TGGTCGATGC GCTCAGGCAC CGCCTGGCCG AAGTCCAGAA GCGCCGCACC CCCGACAGCG ACCTGCCGCG CGACCAGCTC GTGGGCGAAC TCACGGGCCT TGTCGGCCAG GCCGTCGCGG CCTTCGACAC CGCCTTTCGC GACGTGGCGG CCCTGCGCCG CAAGGCCACG CGCGTACTGG GCCGCCTCAC GGCCAAGGAC AACATCAAGT TCGACGGCCT CTCGCGCGTC TCGCACGTCA CCGACGCCAC CGACTGGCGC GTCGAATATC CCTTCGTGGT GCTGTGCCCT GACACCGAGG CCGAGATGGC CCTGCTCGTC AAGGGCTGCA TCGAGCTGGG CCTCACCATC ATCCCGCGCG GCGGCGGCAC CGGCTACACC GGCGGCGCGA TCCCGCTCAC CTGGAAGAGC GTGGTCATCA ACACCGAGAA GCTCGAGGCC ATGACCGAGG TCGAGATGGT TCCGCTGCCC GGCCTCGACA ACCCCGTGCC CACCATCTGG ACCGAAGCCG GCGTCGTCAC CCAGCGCGTG GCCGACGCCG CCGAGCGCGC CGGCTACGTG TTCGCGGTCG ACCCCACTTC CGCCGAGGCC TCGTGCGTGG GCGGCAACGT GGCCATGAAC GCGGGCGGCA AGAAAGCCGT GCTCTGGGGC ACGGCGCTCG ACAACCTGGC TTCGTGGCGC ATGGTCACGC CGCAGGCCGA ATGGCTCGAA GTCACGCGCA TCGGCCATAA CCTCGGCAAG ATCCACGACG CCGAGAGCGC CGAGTTCGAA CTGCAGTACT ACGCCGCCGA CGGCAAGACG AAATTGCGCA CCGAGCGCCT CGACATTCCC GGCCGCACCT TCCGCAAGGA AGGCCTCGGC AAGGACGTGA CCGACAAGTT CCTTTCGGGC CTGCCCGGCA TCCAGAAAGA GGGCTGCGAC GGCCTCATCA CCAGCTGCCG CTGGGTGGTG CACCGCATGC CGGCGCACAC CCGCACCGTG TGCCTCGAAT TCTTCGGCAA CGCGAAGGAC GCGGTGCCCA GCATCGTCGA GATCAAGGAC TTCATGTTCG CCGAGCAGAA GCGCTCCGGC GTGCTGCTCG CGGGCCTCGA GCACCTGGAC GACCGCTACC TGAAGGCCGT GGGCTACGCC ACCAAGTCGA AGAAGCATGG CGGCCTGCCC AAGATGGTGC TGTTCGGCGA CATCGCGGGC GACGACGCCG ATGCGGTGGC GCGCGTCACC TCCGAAGTGG TGCGCATCGC CAATTCGCGC AGCGGCGAAG GCTTCGTCGC CATCAGCCCC GAGGCGCGCA AGAAATTCTG GCTCGACCGC AAGCGCACCG CGGCCATCAG CAAGCACACC AACGCCTTCA AGATCAACGA GGACGTGGTC ATCCCGCTGC CGCGCATGGC CGAGTACAGC GACGGCATCG AGCGCATCAA CATCGAGCTC TCGCTGCAGA ACAAGCTCGC GCTCACCGAC GCGCTCGAAG CCTTCCTGCT GCGCGGCAAC CTGCCGCTCG GCAAGACCGA CGACGCGCAC GAGATCCCGG CCGCCGAGCT GCTCGAAGAC CGCGTCGCGC AGGCCGTGGC GCTGGTGCAG GGCGTGCGTG CGCTCTGGGC CGAATGGCTG CGCGACGTTG ACACGCTGTT CCCGCAGCTG CAGGACCACA CGCTGCGCGC CAGCTGGAAG ACCCAGCTGC GCCAGCCGCT GCAGGAAATC TTCTCGGGCG CCGAGTTCAC GCCGATCCTG GCCGAGTGCA CCGCCATCCA CCAGCAGGTG CTCAAGGGCC GCGTCTGGGT GGCGCTGCAC ATGCACGCGG GCGACGGCAA CGTGCACACC AACATCCCGG TGAACAGCGA CAACTACGAG ATGCTGCAGA CCGCGCATGC CGCGGTGGTG CGCATCATGG CGCTGGCGCG CAGCCTCGAC GGCGTGATCT CGGGCGAGCA CGGCATCGGC ATCACCAAGC TCGAATTCCT GAGCGACGAA GAGCTCGCGC CCTTCATGGA CTACAAGCGC CGCGTCGACC CCGAAGGCCG CTTCAACAAG GGCAAGCTGC TGCGCGCCCC CGCCGGCGAA GCCGCGCTGC CGCATGCCGA CCTGACCAAC GCCTACACGC CGAGCTTCGG CCTCATGGGC CATGAGTCGC TCATCATGCA GCAGAGCGAC ATCGGCGCCA TTGCCGACAG CGTGAAGGAC TGCCTGCGCT GCGGCAAGTG CAAGCCGGTG TGCGCCACCC ACGTGCCGCG CGCCAACCTG CTGTACAGCC CGCGCAACAA GATCCTTGCA ACCTCGCTGC TGGTCGAAGC CTTCCTGTAT GAAGAGCAGA CCCGGCGCGG CATCAGCATC AAGCACTGGG AAGAGTTCGA GGACGTGGCC GACCACTGCA CGGTCTGCCA CAAGTGCCTC ACGCCCTGCC CGGTGAAGAT CGACTTCGGC GACGTGTCGA TGAACATGCG CAACCTGCTG CGCAAGATGG GGCAAAAGAG CTTCCGGCCC GGCAATGCGG CCGCGATGTT CTTCCTCAAC GCGACCAATC CGCAGACCAT CAAGGCGGTG CGCGCGGGCA TGGTGGGCAT CGGCTTCAAG GCGCAGCGCC TGGCCAACGA TCTGCTGCGC GGCCTCGCGA GGAAGCAGAC CGCCGCGCCG CCCGCCACGC TCGGCCCGGC GCCGGTCAAG GAGCAGGTGA TCCACTTCAT CAACAAGAAG ATGCCGGGCA ACCTGCCCAA GCAGACGGCG CGCGCGCTGC TCGACATCGA GGATGCCGAC TACGTGCCGA TCATCCGCGA CCCGAAGGCC ACCACCTCGG AGACCGAGGC GGTCTTCTAC TTTCCCGGCT GCGGTTCGGA GCGCCTCTTC TCGCAGGTGG GCCTTGCCAC GCAGGCCATG CTCTGGCACG CGGGCGTGCA GACGGTGCTG CCGCCCGGCT ACCTGTGCTG CGGCTATCCG CAGCGCGGCA GCGGCCAGTT CGACAAGGCC GAGAAGATGA TCACCGACAA CCGCGTGCTG TTCCACCGCG TGGCCAACAC GCTCAACTAC CTCGACATCA AGACGGTGGT GGTGAGCTGC GGCACCTGCT ACGACCAGCT GCAGGGCTAC CAGTTCGACA AGATCTTCCC GGGCTGCCGC ATCATCGACA TCCACGAGTA CCTGCTCGAA AAGGGCATCA CGCTGGCCGA TGCAGGCGGT GGCGGCTACC TCTACCACGA CCCCTGCCAC AGCCCGATGA AGCTGCAGGA CCCGATGAAG ACCGTCAAGG CGCTGGTCGG CGACAACGTG CTCAAGAACG ACCGCTGCTG CGGCGAATCG GGCACGCTGG GCGTCTCGCG GCCCGACATC TCGACGCAGA TCCGCTTCCG CAAGGAGGAA GAGCTCAAGA AGGGCGAGGC CGCCCTGCGC GCGAACGGCC AGGTCGGCGA AAAGGACAAC GTCAAGATCC TGACCAGCTG CCCGAGCTGC CTGCAAGGCC TCTCGCGCTA CGGCAACGAC CTGAACAACG GCCTGCTCGA AGCCGACTAC ATCGTGGTCG AGATGGCCAA CAAGATCCTC GGCAAGGACT GGATGCCCGA ATACGTGGCC GCCGCGAACC AAGGCGGCAT CGAGCGGGTG CTCGTATGA
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Protein sequence | MNAPTALTTL LSQAAEPVRL REIPYNYTSF SDREIVIRLL GERGWELLQT LRAERRTGRS ARMLYEVLGD IWVVQRNPYL VDDLLDNPRR RGQLVDALRH RLAEVQKRRT PDSDLPRDQL VGELTGLVGQ AVAAFDTAFR DVAALRRKAT RVLGRLTAKD NIKFDGLSRV SHVTDATDWR VEYPFVVLCP DTEAEMALLV KGCIELGLTI IPRGGGTGYT GGAIPLTWKS VVINTEKLEA MTEVEMVPLP GLDNPVPTIW TEAGVVTQRV ADAAERAGYV FAVDPTSAEA SCVGGNVAMN AGGKKAVLWG TALDNLASWR MVTPQAEWLE VTRIGHNLGK IHDAESAEFE LQYYAADGKT KLRTERLDIP GRTFRKEGLG KDVTDKFLSG LPGIQKEGCD GLITSCRWVV HRMPAHTRTV CLEFFGNAKD AVPSIVEIKD FMFAEQKRSG VLLAGLEHLD DRYLKAVGYA TKSKKHGGLP KMVLFGDIAG DDADAVARVT SEVVRIANSR SGEGFVAISP EARKKFWLDR KRTAAISKHT NAFKINEDVV IPLPRMAEYS DGIERINIEL SLQNKLALTD ALEAFLLRGN LPLGKTDDAH EIPAAELLED RVAQAVALVQ GVRALWAEWL RDVDTLFPQL QDHTLRASWK TQLRQPLQEI FSGAEFTPIL AECTAIHQQV LKGRVWVALH MHAGDGNVHT NIPVNSDNYE MLQTAHAAVV RIMALARSLD GVISGEHGIG ITKLEFLSDE ELAPFMDYKR RVDPEGRFNK GKLLRAPAGE AALPHADLTN AYTPSFGLMG HESLIMQQSD IGAIADSVKD CLRCGKCKPV CATHVPRANL LYSPRNKILA TSLLVEAFLY EEQTRRGISI KHWEEFEDVA DHCTVCHKCL TPCPVKIDFG DVSMNMRNLL RKMGQKSFRP GNAAAMFFLN ATNPQTIKAV RAGMVGIGFK AQRLANDLLR GLARKQTAAP PATLGPAPVK EQVIHFINKK MPGNLPKQTA RALLDIEDAD YVPIIRDPKA TTSETEAVFY FPGCGSERLF SQVGLATQAM LWHAGVQTVL PPGYLCCGYP QRGSGQFDKA EKMITDNRVL FHRVANTLNY LDIKTVVVSC GTCYDQLQGY QFDKIFPGCR IIDIHEYLLE KGITLADAGG GGYLYHDPCH SPMKLQDPMK TVKALVGDNV LKNDRCCGES GTLGVSRPDI STQIRFRKEE ELKKGEAALR ANGQVGEKDN VKILTSCPSC LQGLSRYGND LNNGLLEADY IVVEMANKIL GKDWMPEYVA AANQGGIERV LV
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