Gene Vapar_4122 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4122 
Symbol 
ID7974444 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4360207 
End bp4362012 
Gene Length1806 bp 
Protein Length601 aa 
Translation table11 
GC content66% 
IMG OID644794708 
Productaspartyl-tRNA synthetase 
Protein accessionYP_002946001 
Protein GI239817091 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0173] Aspartyl-tRNA synthetase 
TIGRFAM ID[TIGR00459] aspartyl-tRNA synthetase, bacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.154751 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCATGC GTACTCACTA TTGCGGTCTC GTGACCGAAG CCCTGATGGG CCAAACCGTC 
ACCCTGTGCG GCTGGGTCAA CCGCCGCCGC GACCATGGCG GCGTGATCTT CATCGACGTG
CGCGACCGTG AAGGCTACGT GCAGGTGGTG TGCGACCCCG ACCGCGCCGC CACCTTCGCC
GTGGCCGAGA ACCTGCGCAA CGAGTTCTGC GTGCAGGTCA CCGGCCTGGT GCGCGCACGC
CCCGAAGGCA CCACCAACGA CCAGCTCAAG AGCGGCAAGA TCGAAGTGCT GTGCCATGAG
CTCAAGGTGC TGAACCCCTC GGTCACGCCG CCGTTCCTGC TGGACGACGA CAACCTCTCG
GAAACCACGC GCCTCACGCA CCGCGTGCTC GACCTGCGCC GCCCGGCCAT GCAGCGCAAC
ATGATGCTGC GCTACAAGGT CACGATGGAA ACGCGCAAGT TCCTCGATGC CAACGGCTTC
ATCGACATCG AGACCCCGAT GCTCGGCAAG TCCACGCCCG AAGGCGCGCG CGACTACCTC
GTGCCCAGCC GCGTGCACGA CGGCAGCTTC TTCGCGCTGC CGCAGTCGCC GCAGCTCTTC
AAGCAGCTGC TGATGGTGGC CGGCTACGAC CGCTACTACC AGATCGTGAA GTGCTTCCGC
GACGAAGACC TGCGCGCCGA CCGCCAGCCC GAATTCACGC AGATCGACAT CGAGACCTCG
TTCCTTGCCG AGGAAGAGAT CCGCGAGATG TTCGAGGGCA TGATCCGCAA CGTGTTCCGC
AACGCCGCGG GCATCGACCT GCCGGTGTTC CCGACCATGA CGTACGGCGA CGCGATGTTC
AAGTACGGCT CGGACAAGCC CGACCTGCGC GTGAAGCTCG AGTTCACCGA GCTCACCGAA
CTCATGAAGC GCGTCGAGTT CAAGGTGTTC TCGAACGCCG CCACCATGCA GGGCGGCCGC
GTGGTCGCGC TGCGCGTGCC CGGCGGCGGC GCCGAGGGCG GCCTTTCGCG CGGCGAGATC
GACGCCTACC AGGAGTTCGT CAAGATCTAC GGTGCCAAGG GCCTGGCCTA CATCAAGGTC
AACGATGCCG CGGCCGGCCG CGAGGGCCTG CAGAGCCCGA TCGTCAAGAA CCTCGACGAT
GCCTCGCTGG CCGAGATCAT CGCCCGCACG GGTGCGCGCA ACGGCGACAT CCTGTTCTTC
GGTGCCGACA AGGAAAAGAT CGTCAACGAC GCGATCGGTG CGCTGCGCGT GAAGATCGGC
CACAGCGCCT TCGGCAAGAA GAGCGGCCTG TTCGACGACC GCTGGGCGCC GCTGTGGGTG
GTCGACTTCC CGATGTTCGA ATTCGACGAG GAAGGCCAGC GCTGGAGCGC CGTGCACCAT
CCGTTCACCG CGCCGAAGGA CGGCCATGAA GACCTCATGG ACACCGCGCC CGAGAAGTGC
ATTGCCAAGG CCTACGACAT GGTGCTCAAC GGCATCGAGA TGGGCGGCGG CTCGGTGCGT
ATCCACCGCG AGGAAGTGCA GAGCAAGGTG TTCCGCGCGC TCAAGATCAG CGCCGAGGAT
GCGCAGCTCA AGTTCGGTTT CCTGCTCGAC GCGCTGCAGT ACGGCGCCCC GCCGCACGGC
GGCATCGCCA TCGGCCTGGA CCGCCTGGTC ATGCTCATGA CCGGCGCCGA GTCGATCCGC
GACGTGATCG CCTTCCCCAA GACCCAGCGC GCGCAGGACC TGCTCACGCA GGCGCCGAGC
CCGGTCGACG AGAAGCAGCT GCGCGAGCTG CACATCCGGC TGCGCAACGT ACAGCAACCC
GCCTGA
 
Protein sequence
MAMRTHYCGL VTEALMGQTV TLCGWVNRRR DHGGVIFIDV RDREGYVQVV CDPDRAATFA 
VAENLRNEFC VQVTGLVRAR PEGTTNDQLK SGKIEVLCHE LKVLNPSVTP PFLLDDDNLS
ETTRLTHRVL DLRRPAMQRN MMLRYKVTME TRKFLDANGF IDIETPMLGK STPEGARDYL
VPSRVHDGSF FALPQSPQLF KQLLMVAGYD RYYQIVKCFR DEDLRADRQP EFTQIDIETS
FLAEEEIREM FEGMIRNVFR NAAGIDLPVF PTMTYGDAMF KYGSDKPDLR VKLEFTELTE
LMKRVEFKVF SNAATMQGGR VVALRVPGGG AEGGLSRGEI DAYQEFVKIY GAKGLAYIKV
NDAAAGREGL QSPIVKNLDD ASLAEIIART GARNGDILFF GADKEKIVND AIGALRVKIG
HSAFGKKSGL FDDRWAPLWV VDFPMFEFDE EGQRWSAVHH PFTAPKDGHE DLMDTAPEKC
IAKAYDMVLN GIEMGGGSVR IHREEVQSKV FRALKISAED AQLKFGFLLD ALQYGAPPHG
GIAIGLDRLV MLMTGAESIR DVIAFPKTQR AQDLLTQAPS PVDEKQLREL HIRLRNVQQP
A