Gene Vapar_4115 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4115 
Symbol 
ID7974437 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp4355388 
End bp4355888 
Gene Length501 bp 
Protein Length166 aa 
Translation table11 
GC content69% 
IMG OID644794701 
Producttransport-associated 
Protein accessionYP_002945994 
Protein GI239817084 
COG category[R] General function prediction only 
COG ID[COG2823] Predicted periplasmic or secreted lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAATA TTCGCCAAAC AACCATCGCC ATGCCGTTTT CGCGCGCATG GCTCGCCGTG 
CTGCTGGCCG GCGCCGCGCT GACCCTCGCC GCCTGCGACA ACGCGGGCAA CCGCACCGCG 
GGCGAGAAGC TCGACAGCGC CATCGCAAAG ACCGAGAAGG CGGCCGACAC GGCCGCCGCC 
AAGACCGCGG AGGCCCTGAA GGAAGCGAAG GCGAAGATCG ACGCCTCCGG CACCGCCGCC 
GAGGTGAAGG ACGCCGCAAA GAACGCCGGC GCGGCCGTGA GTGCCACGGT GGACGATGCC 
GCGATCACCG CGTCGGTGTC CGCGGGCCTC GCCAAGGATC CGGACCTGAG CGCGATCAAG 
ATCGACGTCG ACACCAAGGG CGGCGTCGTG AGCCTGAAGG GCCCCGCACC CACGGCCGCC 
GCCAAGGCGC GCGCCGAGGA GATCGCCAAG GGCGTGCAGG GCGTGACCTC GGTGAACAAC 
CAGCTCGAGG TCAGAAGCTG A
 
Protein sequence
MNNIRQTTIA MPFSRAWLAV LLAGAALTLA ACDNAGNRTA GEKLDSAIAK TEKAADTAAA 
KTAEALKEAK AKIDASGTAA EVKDAAKNAG AAVSATVDDA AITASVSAGL AKDPDLSAIK 
IDVDTKGGVV SLKGPAPTAA AKARAEEIAK GVQGVTSVNN QLEVRS