| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4104 |
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| Symbol | |
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| ID | 7974426 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4346025 |
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| End bp | 4347470 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794690 |
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| Product | carboxyl-terminal protease |
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| Protein accession | YP_002945983 |
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| Protein GI | 239817073 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0793] Periplasmic protease |
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| TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.228139 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGGGTC AGAAACTGAA GATTACCGGC TGGGTTGCCG CCGGCGCCGT TGCCGGCGTC
TTGACCACCG TCTCGTTGCA GACGGTTGCA CGCGGCTCGC TCGCGCCGCT CCCGCTCGAG
GAATTGCAGC AGCTCGCCGC GGTGTTCGGC ATGGTCAAGA GCGACTATGT CGAGCCGGTC
GACGAGAAAA AGCTCATTTC CGACGCCATC TCGGGGATGG TGGCCGGGCT CGACCCGCAT
TCCCAGTACT TCGACAAGAA GTCCTTCAAG GAATTCAGGG AAGGCACCAC CGGCCGCTTC
GTCGGCGTGG GCATCGAGAT TTCCCAGGAA GACGGGCTCA TCAAGGTGGT GTCGCCGATC
GAGGGCTCGC CGGCCTTCCG CGCGGGCCTC AAGCCCAACG ACCTGATCAC CAAGATCGAC
GACACGGCCG TGCGCGGCCT GTCGCTCAAC GAGGCCGTCA AGCGCATGCG CGGCGAGGCC
AACACCAAGG TGCTGCTGAC CATCTTCCGC AAGGACGAGA GCCGCACCTT CCCGGTCACG
ATCACGCGCG AAGAAATCCG TACCCAGTCG GTGCGCGGCA AGGTCATGGA GCCGGGCTAC
GGCTGGATCC GGCTGTCGCA GTTCCAGGAA CGCACGGTCG ACGACTTCGT GAAGAAGGTC
GAGGACATCT ACAAGGAAGA GCCCAACCTC AAGGGCCTGG TGCTCGACCT GCGCAACGAC
CCGGGCGGCC TGCTCGACGC GGCCGTCGCC ATCTCGGCCG CCTTCCTGCC CGAGAACGTC
ACGGTGGTGT CGACCGACGG CCAGCTGGCC GAGAGCAAGT CCGTCTACAA GGCGGCGCCC
GAGTTCTACC AGCGCCGCAC CGGCAGCGAT CCGCTGCGCA ACCTGCCCGC GGCGCTCAAG
ACCGTGCCGC TGGTGGTGCT GGTGAACGAA GGCTCGGCCT CCGCGAGCGA GATCGTGGCC
GGCGCGCTGC AGGACCACAA GCGCGCCACC ATCATGGGCA GCCAGACCTT CGGCAAGGGC
TCGGTGCAGA CGGTGCGCCC GCTCGGACCG GACACGGGCC TCAAGATCAC CACGGCGCGC
TACTACACGC CGAGCGGTAC CTCGATCCAG GCCAAGGGCA TCGTGCCCAA CGTGCTGATC
GACGAAAGCG CCGAGGGCAG CCCGTTTGCC GCCCTGCGCA TGCGCGAGGC CGACCTCGAA
AAGCACCTGG CCAGCGGCCA GGGCCCCGAA ACGAAGGACC CGGAACGCGA AAAGGCCCGC
GACGAAGCCC GCAAGCGCCT CGAGGAAGAA GCCAAGAAGC CGCCGCAGGA CCGCAAGGTG
CCCGAGTTCG GCACCGACAA GGACTTCCCG CTGGTGCAGG CGCTCAACCG CCTCAAGGGC
CAGCCGGTGC TCGTGAGCAA GACACAGGTC ATCGTCGAGA ATAAGGAAGA AAAGAAGGAA
AACTGA
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| Protein sequence | MMGQKLKITG WVAAGAVAGV LTTVSLQTVA RGSLAPLPLE ELQQLAAVFG MVKSDYVEPV
DEKKLISDAI SGMVAGLDPH SQYFDKKSFK EFREGTTGRF VGVGIEISQE DGLIKVVSPI
EGSPAFRAGL KPNDLITKID DTAVRGLSLN EAVKRMRGEA NTKVLLTIFR KDESRTFPVT
ITREEIRTQS VRGKVMEPGY GWIRLSQFQE RTVDDFVKKV EDIYKEEPNL KGLVLDLRND
PGGLLDAAVA ISAAFLPENV TVVSTDGQLA ESKSVYKAAP EFYQRRTGSD PLRNLPAALK
TVPLVVLVNE GSASASEIVA GALQDHKRAT IMGSQTFGKG SVQTVRPLGP DTGLKITTAR
YYTPSGTSIQ AKGIVPNVLI DESAEGSPFA ALRMREADLE KHLASGQGPE TKDPEREKAR
DEARKRLEEE AKKPPQDRKV PEFGTDKDFP LVQALNRLKG QPVLVSKTQV IVENKEEKKE
N
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