Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4104 |
Symbol | |
ID | 7974426 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4346025 |
End bp | 4347470 |
Gene Length | 1446 bp |
Protein Length | 481 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644794690 |
Product | carboxyl-terminal protease |
Protein accession | YP_002945983 |
Protein GI | 239817073 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0793] Periplasmic protease |
TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.228139 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGGGTC AGAAACTGAA GATTACCGGC TGGGTTGCCG CCGGCGCCGT TGCCGGCGTC TTGACCACCG TCTCGTTGCA GACGGTTGCA CGCGGCTCGC TCGCGCCGCT CCCGCTCGAG GAATTGCAGC AGCTCGCCGC GGTGTTCGGC ATGGTCAAGA GCGACTATGT CGAGCCGGTC GACGAGAAAA AGCTCATTTC CGACGCCATC TCGGGGATGG TGGCCGGGCT CGACCCGCAT TCCCAGTACT TCGACAAGAA GTCCTTCAAG GAATTCAGGG AAGGCACCAC CGGCCGCTTC GTCGGCGTGG GCATCGAGAT TTCCCAGGAA GACGGGCTCA TCAAGGTGGT GTCGCCGATC GAGGGCTCGC CGGCCTTCCG CGCGGGCCTC AAGCCCAACG ACCTGATCAC CAAGATCGAC GACACGGCCG TGCGCGGCCT GTCGCTCAAC GAGGCCGTCA AGCGCATGCG CGGCGAGGCC AACACCAAGG TGCTGCTGAC CATCTTCCGC AAGGACGAGA GCCGCACCTT CCCGGTCACG ATCACGCGCG AAGAAATCCG TACCCAGTCG GTGCGCGGCA AGGTCATGGA GCCGGGCTAC GGCTGGATCC GGCTGTCGCA GTTCCAGGAA CGCACGGTCG ACGACTTCGT GAAGAAGGTC GAGGACATCT ACAAGGAAGA GCCCAACCTC AAGGGCCTGG TGCTCGACCT GCGCAACGAC CCGGGCGGCC TGCTCGACGC GGCCGTCGCC ATCTCGGCCG CCTTCCTGCC CGAGAACGTC ACGGTGGTGT CGACCGACGG CCAGCTGGCC GAGAGCAAGT CCGTCTACAA GGCGGCGCCC GAGTTCTACC AGCGCCGCAC CGGCAGCGAT CCGCTGCGCA ACCTGCCCGC GGCGCTCAAG ACCGTGCCGC TGGTGGTGCT GGTGAACGAA GGCTCGGCCT CCGCGAGCGA GATCGTGGCC GGCGCGCTGC AGGACCACAA GCGCGCCACC ATCATGGGCA GCCAGACCTT CGGCAAGGGC TCGGTGCAGA CGGTGCGCCC GCTCGGACCG GACACGGGCC TCAAGATCAC CACGGCGCGC TACTACACGC CGAGCGGTAC CTCGATCCAG GCCAAGGGCA TCGTGCCCAA CGTGCTGATC GACGAAAGCG CCGAGGGCAG CCCGTTTGCC GCCCTGCGCA TGCGCGAGGC CGACCTCGAA AAGCACCTGG CCAGCGGCCA GGGCCCCGAA ACGAAGGACC CGGAACGCGA AAAGGCCCGC GACGAAGCCC GCAAGCGCCT CGAGGAAGAA GCCAAGAAGC CGCCGCAGGA CCGCAAGGTG CCCGAGTTCG GCACCGACAA GGACTTCCCG CTGGTGCAGG CGCTCAACCG CCTCAAGGGC CAGCCGGTGC TCGTGAGCAA GACACAGGTC ATCGTCGAGA ATAAGGAAGA AAAGAAGGAA AACTGA
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Protein sequence | MMGQKLKITG WVAAGAVAGV LTTVSLQTVA RGSLAPLPLE ELQQLAAVFG MVKSDYVEPV DEKKLISDAI SGMVAGLDPH SQYFDKKSFK EFREGTTGRF VGVGIEISQE DGLIKVVSPI EGSPAFRAGL KPNDLITKID DTAVRGLSLN EAVKRMRGEA NTKVLLTIFR KDESRTFPVT ITREEIRTQS VRGKVMEPGY GWIRLSQFQE RTVDDFVKKV EDIYKEEPNL KGLVLDLRND PGGLLDAAVA ISAAFLPENV TVVSTDGQLA ESKSVYKAAP EFYQRRTGSD PLRNLPAALK TVPLVVLVNE GSASASEIVA GALQDHKRAT IMGSQTFGKG SVQTVRPLGP DTGLKITTAR YYTPSGTSIQ AKGIVPNVLI DESAEGSPFA ALRMREADLE KHLASGQGPE TKDPEREKAR DEARKRLEEE AKKPPQDRKV PEFGTDKDFP LVQALNRLKG QPVLVSKTQV IVENKEEKKE N
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