| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4091 |
|---|
| Symbol | |
|---|
| ID | 7974413 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 4335287 |
|---|
| End bp | 4336123 |
|---|
| Gene Length | 837 bp |
|---|
| Protein Length | 278 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644794677 |
|---|
| Product | chromosome segregation and condensation protein ScpA |
|---|
| Protein accession | YP_002945970 |
|---|
| Protein GI | 239817060 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1354] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGACA ACGAGGACAG CGACACGCTC GTGGCCAGCA TGCCCGAAGT GGTCGACCAG
GTCGCGCTCG CGAGGCTCTA TGGCGAGCCA CTGTTCGCGA TGCCGAAGGA CCTGTACATC
CCGCCGGAGG CGTTGCAGGT CTTCCTCGAG GCCTTCGAGG GCCCGCTCGA TCTGCTGCTC
TACCTGATCA GGAAGCAGAA CTTCAACATC CTCGACATCC CGATGGCGGG GCTCACGCGG
CAGTACCTGA GCTACGTCGA CGAGATCCGC CAGACCAACC TGGAGCTCGC GGCCGAGTAT
TTGCTGATGG CCGCGATGCT GATCGAGATC AAGTCGCGCA TGCTGCTGCC GCCCAAGAAG
GTGGCCGACG GCGAAGAGGC CGAAGACCCG CGCGCCGAGC TCGTGCGCCG CCTGCTCGAG
TACGAGCAGA CCAAGCTGCA GGCCGCCGCC ATCAGCGCGC TGCCGACCTA CGGACGCGAC
TTCTGGAAGG GGCAGGTCTA CATCGAGCAG TCGCTCAAGC CGCGCTTTCC GGATGTGAAC
GTGATCGAGC TGCGCGACGC CTGGGCCGAC ATCATGAAGC GCGCCAAGCT CGTGCAGCAC
CACAAGATCT CGCGCGAGGA GCTCAACGTG CGCGAGCACA TGAGCATCGT GCTGCGCCAC
CTGCAGGGGC AGCGCTTCGT CGAATTCGAG AAGCTGTTCG ACGTGTCGCG CGGCGCGCCG
GTGCTGATCG TCACCTTCAT CGCGATGCTC GAGCTCGCGA AGGAAACGCT GATCGACATC
ACGCAGGCCG AGGCCTTCGC GCCGATCTAC GTGCGGCTGG CCTACTCGCC CGCCTGA
|
|---|
| Protein sequence | MKDNEDSDTL VASMPEVVDQ VALARLYGEP LFAMPKDLYI PPEALQVFLE AFEGPLDLLL
YLIRKQNFNI LDIPMAGLTR QYLSYVDEIR QTNLELAAEY LLMAAMLIEI KSRMLLPPKK
VADGEEAEDP RAELVRRLLE YEQTKLQAAA ISALPTYGRD FWKGQVYIEQ SLKPRFPDVN
VIELRDAWAD IMKRAKLVQH HKISREELNV REHMSIVLRH LQGQRFVEFE KLFDVSRGAP
VLIVTFIAML ELAKETLIDI TQAEAFAPIY VRLAYSPA
|
|---|
| |