Gene Vapar_4082 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4082 
Symbol 
ID7974404 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp4327610 
End bp4328281 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content70% 
IMG OID644794668 
Producttranscriptional regulator, GntR family 
Protein accessionYP_002945961 
Protein GI239817051 
COG category[K] Transcription 
COG ID[COG1802] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.833771 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAACCCG CGAAAACCCT CGACGCCAGC AGCCTGCAGG ACCAGATCCG CGGCCGGCTT 
GAAAAAGACA TCCTGGACGG CACGCTGTCG CCCGGCATGC CGATCGACGA AAAGGCGCTG 
GCCGCGAGCT TCAACATCTC GCGCACGCCG GTGCGCGAGG CCCTGCTGCT GCTGAGCGCG 
CGCGGGCTGG TCGACATCGT TCCGCGCACC GGCATCTACG TGCGCCAGCT GCGCGCGAAC 
GAACTCGTCG CCATGATGGA AGCGCTCGGC GAACTCGAAG GGGTGCTGGC GCGGCTGGCG 
GCGCTGCGCA TCGGGCCGGC GCTGCGCGTC GAACTGCAAC GCGCGCTCGA AGGCACGGCC 
GCCCGGGCGC AGGCGGACGA CGCGGAGGGC TACCAGCTTG CCAATGCCGC GCTGCACGAC 
GTGATTTACC GCGCGAGCGG CAACCCGTTC ATCGTCGAGC AGGCGCAGAC CGTGCGCCTG 
CGCATCGCGG CCTACCGCGG GCGGATGTTC GAGAAGCCCG GTCGCCTGGC CGCCTCGCAG 
CGCGAGCACG AGCGGGTGGT GGAGTGGATC CTCAAGGGCC ATGCCGACAA CGCCGCGGAG 
GCGATGCGCG ACCACATCTC GGTGGGCGGC AAGGTGTTTG CCGACCTGGT GCTGGTCAAC 
AAGCTCGGCT AG
 
Protein sequence
MQPAKTLDAS SLQDQIRGRL EKDILDGTLS PGMPIDEKAL AASFNISRTP VREALLLLSA 
RGLVDIVPRT GIYVRQLRAN ELVAMMEALG ELEGVLARLA ALRIGPALRV ELQRALEGTA 
ARAQADDAEG YQLANAALHD VIYRASGNPF IVEQAQTVRL RIAAYRGRMF EKPGRLAASQ 
REHERVVEWI LKGHADNAAE AMRDHISVGG KVFADLVLVN KLG