| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4072 |
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| Symbol | |
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| ID | 7974394 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4313774 |
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| End bp | 4316647 |
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| Gene Length | 2874 bp |
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| Protein Length | 957 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644794658 |
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| Product | formate dehydrogenase, alpha subunit |
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| Protein accession | YP_002945951 |
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| Protein GI | 239817041 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3383] Uncharacterized anaerobic dehydrogenase |
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| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCCC CGTCCAAGCT CGCGGAGCTG ATGCCGCAAA CCATCGAATT CACCCTCGAC
GGCCAAGCCA TCCAGGCCTT CGACGGCGAA ACCATCTACA AGGCGGCCGA GCGCCACGGC
GTCGAGATTC CCCACCTGTG CTTCAAGGAC GGCTACCGCG CCGACGGCAA CTGCCGCGCC
TGCGTGGTCG AGGTGAAGGG CGAGCGCACG CTCGCGCCCA GCTGCTGCCG CAACGTGACG
GCCGGCATGG AAGTGAAGGC CACCAGCGAG CGCGCGCTCA AGAGCCAGAA GATGGTGGTC
GAGATGCTGC TGTCCGACAT GCCCGACCAG GGCTACAAAT GGATCGGCGA CGACGCCACC
CAGCAGCACG GCGAGCTCAG CGCCTGGGCG AAGAAGCTCG ACATCGCGGT GCGGCCCGAA
CTCAAGGCGC TGCGCCGCGA GCAGCCCAAG GCCGACATCT CGCACCCCGC GATGGCCGTC
AACCTCGATG CCTGCATCCA GTGCAACCGC TGCGTGCGCG CCTGCCGCGA AGAGCAGGTC
AACGACGTCA TCGGCTACGC GCTGCGCGGC GGCGACAGCA AGATCGTGTT CGACCTGGAC
GACCCGATGG GCGACAGCAC CTGCGTGGCC TGCGGCGAAT GCGTGCAGGC CTGCCCGACC
GGCGCGCTCA TGCCCAAGAG CCACATCGGC TCGCAAGCGG TCGACCGCAA GGTCGATTCG
GTGTGCCCGT TCTGCGGCGT GGGCTGCCTC GTCACCTACA ACGTCAAGGA CGAGAAGATC
GTCAGCGTCG ACGGCCGCGA CGGCCCGGCC AACCACAACC GCCTGTGCGT GAAGGGCCGC
TTCGGCTTCG ACTACGCGCA CCATCCGCAG CGCCTGACCA AGCCGCTGAT CCGAAAGGCC
GGCATGCCGA AGGATTTCGG CGATGCACCG CGGCCGGACG ACTGGAGCGA GTATTTCCGC
GAAGCCACCT GGGAAGAGGC GCTCGCGCTC ACCACCGGCA AGCTCTCGGG CCTGCGCGAC
AGCCACGGGC CCAAGTCGCT CGCGGGCTTC GGCTCGGCCA AGGGCAGCAA CGAAGAGGCC
TACCTGTTCC AGAAGCTCGT GCGCACGGGC TTCGGCAGCA ACAACATCGA CCACTGCACG
CGGCTGTGCC ACGCCTCCAG CGTGGCCGCG CTGCTCGAAG GTGTGGGTTC GGGCGCGGTG
AGCAACCAGG TCAACGACGT GGAGCATGCG GGGCTGATCT TCGTCATCGG CTCCAACCCC
ACGGCCAACC ACCCGGTGGC CGCCACCTGG ATGAAAAACG CCGCCCAGCG CGGTGCCAAG
ATCGTGCTGG CCGACCCGCG CCGCACCGAC ATCAGCCGCC ATGCCTGGCG CACGCTGCAG
TTCAAGGCCG ACACCGACGT GGCCATGCTG AACGCGCTGA TCCATGCCGT GATCGACGAA
GGCCTGGTCG ATCAGGAGTT CGTGCGCACG CGCGCCAGCA ACTACGAGGC GCTGCGCGAG
AACGTCAAGG GCTACAGCCC CGAGGCGATG GCGCCGATCT GCGGCGTGCC GGCCGAAACG
CTGCGCGAAG TGGCGCGCGC CTTTGCCACG GCCAAGGGCG CGATGATCCT CTGGGGCATG
GGCGTGAGCC AGCACGTGCA CGGCACCGAC AACGCGCGCT GCCTCATTGC GCTGGCCACC
GTCACCGGCC AGATCGGCAA GCCGGGCTCG GGCCTGCATC CGCTGCGCGG CCAGAACAAT
GTGCAGGGCG CGAGCGACGC CGGCCTGATC CCGATGATGT TCCCCAACTA CCAGCGCGTC
GACAATCCGG CGGTGCATGC GTGGTTCGAG GACTTCTGGG GCACGCCGCT CGATGCGACG
CCGGGCTACA CCGTGGTCGA GATCATGCAC AAGGCGCTGG CGCCCGACAC CGATCCGCAC
AAGGTGCGCG GCATGTACAT CATGGGCGAG AACCCGGCCA TGAGCGACCC CGACCTGAAC
CATGCACGCC ATGCGCTCGC GAGCCTGGAG CACCTGGTGG TGCAGGACAT CTTCATGACC
GAGACCGCGT GGCTCGCCGA CGTGGTGCTG CCCGCGAGCG CCTGGCCCGA GAAGACCGGC
ACGGTCAGCA ACACCGACCG CATGGTGCAG CTGGGCAAGC GCGCGCTCAA CCCGCCGGGC
GACGCGCGGC CCGATCTCTG GATCATCCAG CAGATCGCCA GCGGCATGGG CCTCGGGTGG
AACTACGAGG GCGAGGAGTC CGGCGTGGCC GCGGTCTACG AGGAAATGCG CCAGGCCATG
CATGCGGTGA TCAGCGGCAT CAGCTGGGAG CGGCTGCAGC GCGATTCGAG CGTGACCTAC
CCTTGCCTCA GCGAGGAAGA TCCGGGCCAG CCCACGGTGT TCATCGACGA CTTCCCCACG
GCCGACGGCC GCGTGAGGCT GGTGCCGGCC GACATCATTC CGGCGGACGA GCGGCCCGAT
GCCGAGTACC CCTTCGTGCT CATCACCGGC CGCCAGCTCG AGCACTGGCA CACCGGCAGC
ATGACGCGCC GCGCCACGGT GCTCGATGCG CTCGAGCCCA TGGCCACGGC CTCGATGAAC
CAGGCCGACC TGCTGAAGCT CGGCCTCGAG GCCGGCGACG TGATCACCGT GCAGTCGCGC
CGCGGCGAGG TGGCCATCCA CGTGCGGCGC GACGACGGCA CGCCCAGCGG CGCGGTGTTC
GTTCCCTTCG CCTACTACGA GGCGGCGGCC AACCTGATGA CCAATGCCGC GCTCGATCCC
ATGGGCAAGA TCCCGGAGTT CAAGTACTGC GCGGTGCGCA TTGCGCGCGG CGGCCAGCCG
ATGGCGGCGG CCGGCTACGG CACCGGCTCC GGCGTGCTCG CGGCGGTGGA CTGA
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| Protein sequence | MNAPSKLAEL MPQTIEFTLD GQAIQAFDGE TIYKAAERHG VEIPHLCFKD GYRADGNCRA
CVVEVKGERT LAPSCCRNVT AGMEVKATSE RALKSQKMVV EMLLSDMPDQ GYKWIGDDAT
QQHGELSAWA KKLDIAVRPE LKALRREQPK ADISHPAMAV NLDACIQCNR CVRACREEQV
NDVIGYALRG GDSKIVFDLD DPMGDSTCVA CGECVQACPT GALMPKSHIG SQAVDRKVDS
VCPFCGVGCL VTYNVKDEKI VSVDGRDGPA NHNRLCVKGR FGFDYAHHPQ RLTKPLIRKA
GMPKDFGDAP RPDDWSEYFR EATWEEALAL TTGKLSGLRD SHGPKSLAGF GSAKGSNEEA
YLFQKLVRTG FGSNNIDHCT RLCHASSVAA LLEGVGSGAV SNQVNDVEHA GLIFVIGSNP
TANHPVAATW MKNAAQRGAK IVLADPRRTD ISRHAWRTLQ FKADTDVAML NALIHAVIDE
GLVDQEFVRT RASNYEALRE NVKGYSPEAM APICGVPAET LREVARAFAT AKGAMILWGM
GVSQHVHGTD NARCLIALAT VTGQIGKPGS GLHPLRGQNN VQGASDAGLI PMMFPNYQRV
DNPAVHAWFE DFWGTPLDAT PGYTVVEIMH KALAPDTDPH KVRGMYIMGE NPAMSDPDLN
HARHALASLE HLVVQDIFMT ETAWLADVVL PASAWPEKTG TVSNTDRMVQ LGKRALNPPG
DARPDLWIIQ QIASGMGLGW NYEGEESGVA AVYEEMRQAM HAVISGISWE RLQRDSSVTY
PCLSEEDPGQ PTVFIDDFPT ADGRVRLVPA DIIPADERPD AEYPFVLITG RQLEHWHTGS
MTRRATVLDA LEPMATASMN QADLLKLGLE AGDVITVQSR RGEVAIHVRR DDGTPSGAVF
VPFAYYEAAA NLMTNAALDP MGKIPEFKYC AVRIARGGQP MAAAGYGTGS GVLAAVD
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