| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4059 |
|---|
| Symbol | |
|---|
| ID | 7974381 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4301580 |
|---|
| End bp | 4302806 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644794646 |
|---|
| Product | formate dehydrogenase, gamma subunit |
|---|
| Protein accession | YP_002945939 |
|---|
| Protein GI | 239817029 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2864] Cytochrome b subunit of formate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01583] formate dehydrogenase, gamma subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAG CGCTGACCGC TCTCGCTCTT TGCTGTGCCG TGCTGGGTAC GGCCTTCGCG
CAGGCGCAGC CGCCGGCCGC CCCTGGAACG GCGTCCGCCC CCGCGGCACC TGCCGCAACC
GCCGCGCCGG AGGCCGCCGT GGGCGGCATC CGCGGCCAGA ACATCTTCGA GGTCAAGCCC
GAAGCCAGCG CCGACCCCAA CTACGCGAAC CAGACCAATG GCGAGCGCAT GAAGGTGCAG
CCCGGCAACA ACGCGCCGAT GTGGCGCCAG GTGGGGCAGG GCGTGACCGG CTACAGCAGC
CTGCCGAAAA GCCAGGCGCC CGAGGCCGGC AACCTGATCC AGCCTTTCGT GCAGTACCCC
GGTTCGCGCT TGACCAATGC CGGCGAAGCC TGGCGCCAGG TGCGCAACGA CTGGATCATT
CCCTATGGCG CGGCGCTGCT GTTCGTCGTG CTGCTGGCGC TGGCCATCTT CTATTTCACG
CGCGGCCCGA TCCGCCTGCA CGGCCAGGAA ACCGGCCGCA AGATCGAGCG GTTCACGCCC
TTCGAACGCG CCACGCACTG GTCGAACGCC ATCGCCTTCG TCACGCTGGC CATCACCGGC
ATCGTGATGG CCTTCGGCAA GTTCTTCCTG ATGCCGTGGA TGGGCAGCGC GCTCTTCGGC
TGGATTGCCT ACGCGCTCAA GAACGTCCAT AACTTCGTCG GGCCGCTGTT TGTGGTGACG
ACGGTGTTCA TGGTCTTCAC CTTCATCCGC GACAACCTGC CGCGCGCCAG CGACCTGCAA
TGGCTCGCGC GCTTCGGCGG CCTGTTCGGC GGCAAGGAAG TGCCATCGCA CCGCTTCAAT
GCGGGCGAGA AGCTGGTCTT CTGGGGCGGC GTGCTGTTCC TCGGCCTCTT CATCATCGGC
TCGGGGCTCT TCCTGGACAA GCTGCTGCCG GGCTTCGTCT ACACGCGCGG CGAGATGCAG
GTGGCGCACA TGGTGCACGG CGTCGCCACC TTGCTGATGA TGGCGATGAT CATGGGCCAC
ATCTACATCG GGACGCTCGG CATGACGGGC GCCTACAAGG CCATGCGCAC CGGCTACGTC
GACGAGACCT GGGCCCGGGA GCATCACGAA CTCTGGTACG ACGACATCGC CGCGGGCAAG
ATTCCTGCGC AGCGCACGGC GCCGGCCGGC TCGGCCGCTG CACCGGCCGC GCGGCCCGTG
AGACCCGCCG AAGGAACACC CTCATGA
|
|---|
| Protein sequence | MKQALTALAL CCAVLGTAFA QAQPPAAPGT ASAPAAPAAT AAPEAAVGGI RGQNIFEVKP
EASADPNYAN QTNGERMKVQ PGNNAPMWRQ VGQGVTGYSS LPKSQAPEAG NLIQPFVQYP
GSRLTNAGEA WRQVRNDWII PYGAALLFVV LLALAIFYFT RGPIRLHGQE TGRKIERFTP
FERATHWSNA IAFVTLAITG IVMAFGKFFL MPWMGSALFG WIAYALKNVH NFVGPLFVVT
TVFMVFTFIR DNLPRASDLQ WLARFGGLFG GKEVPSHRFN AGEKLVFWGG VLFLGLFIIG
SGLFLDKLLP GFVYTRGEMQ VAHMVHGVAT LLMMAMIMGH IYIGTLGMTG AYKAMRTGYV
DETWAREHHE LWYDDIAAGK IPAQRTAPAG SAAAPAARPV RPAEGTPS
|
|---|
| |