| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4053 |
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| Symbol | |
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| ID | 7974375 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4294963 |
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| End bp | 4295625 |
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| Gene Length | 663 bp |
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| Protein Length | 220 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794640 |
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| Product | channel protein, hemolysin III family |
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| Protein accession | YP_002945933 |
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| Protein GI | 239817023 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
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| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.324319 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTTCCA ACAAACCCAT ATCTGCGGCT CGCGCCCAGA CCACACTCGA AGAGATCTTC
AATGCGCTGA GCCATGGCCT CGGCCTGCTG CTGGCCGTGG CCTCGCTGCC GATCCTGGTC
TACAGCGCCG CCCAGAAGGG CCAGGCCGCG GGCATCGTCG GCGCCTCGCT CTTTGCCGGC
ACGGCGATCG TGCTGTACCT GATTTCCACG CTCTACCACG CGCTGCCGAT GGGCCGGGCC
AAGGCCTGGT TCAACCGGCT CGACCACGCG GCCATCTACC TCTTCATCGC GGGCAGCTAC
ATGCCGTTCC TCTTCGGCGT GCTGCGCGGT CCATGGGGCT GGACGCTGTT CGGCTGCATC
TGCGCCGCGG CGGCGCTGGG CGTGGGCGCC AAGCTGTTCA ACCGGCTGCA GCATCCGTTG
TGGTCGACCG GGCTCTACGT GGCGATGGGA TGGATGGCGC TGATGGCGGC GGTGCCGCTG
TACGAGCGCA TGTCGCCGGC GGGCCTGGGC TGGCTCGTGG CCGGCGGGCT GTTCTACACC
GCAGGTGCGG TGGTCTTCCT GTTCGACAAC AAGGTGCGCT TTGCCCATTC GGTGTGGCAC
CTGTTCGTGC TGGCGGGCAG CACCTGCCAC TTCTTTGCGG TGCTCTGGCA TTCGCACGGC
TGA
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| Protein sequence | MASNKPISAA RAQTTLEEIF NALSHGLGLL LAVASLPILV YSAAQKGQAA GIVGASLFAG
TAIVLYLIST LYHALPMGRA KAWFNRLDHA AIYLFIAGSY MPFLFGVLRG PWGWTLFGCI
CAAAALGVGA KLFNRLQHPL WSTGLYVAMG WMALMAAVPL YERMSPAGLG WLVAGGLFYT
AGAVVFLFDN KVRFAHSVWH LFVLAGSTCH FFAVLWHSHG
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