| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4047 |
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| Symbol | |
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| ID | 7974369 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4289125 |
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| End bp | 4291137 |
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| Gene Length | 2013 bp |
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| Protein Length | 670 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644794634 |
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| Product | cytochrome o ubiquinol oxidase, subunit I |
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| Protein accession | YP_002945927 |
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| Protein GI | 239817017 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02843] cytochrome o ubiquinol oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.354742 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGATGT TCGAGAACCT TGACCTGACG AAGCTCATCT TCGGCCGCCT CACGTGGGAG
GCGATTCCCT ACCACGAGCC GATCCTGCTC GTCACCTTCA TCGCGGTCGT CCTCGGCGGC
CTCGCACTGC TTGGCGCCAT CACCTACTAC AAGGTGTGGG GCACGCTGTG GCGCGACTGG
ATCACCAGCA TCGACCACAA GAAGATCGGC ATCATGTACA TCATCCTTGG CCTGGTGATG
CTGCTGCGCG GCTTCTCCGA CGCCATCATG ATGCGGGCCC AGCAGGCCGT CGCCTTCGGC
GACAACGCCG GCTTCCTGCC GCCGCACCAC TACGACCAGA TCTTCACCGC CCACGGCGTG
ATCATGATCT TCTTCGTGGC GATGCCGCTG GTCACGGGCC TCATGAACTT CGTGGTGCCG
CTGCAGATCG GCGCACGCGA CGTGGCCTTT CCGTTCCTGA ACAACTTCAG CTTCTGGATG
ACCACCTTCG GCGCCGGCCT CGTGATGGCG TCGCTCTTCG TGGGCGAATT CGCCAAGACC
GGCTGGCTCG CCTACCCGCC GCTGTCGGGC CTTCTCTTCA GCCCCGACGT GGGGGTGGAC
TACTACATCT GGTCATTGCA GATCGCGGGG GTCGGCACGC TGCTGTCGGG CGTCAACCTG
CTGGCCACCA TCGTGAAGAT GCGCGCGCCC GGCATGACGA TGATGAAGAT GCCCGTCTTC
ACCTGGACCG CCCTGTGCAC CAACGTGCTG ATCGTGGCCG CCTTCCCGGT GCTCACGGCC
GTGCTCGCGC TGCTGTCGCT GGACCGCTAC GTCGGCACCA ACTTCTTCAC GAACGACCTC
GGCGGCAACG CCATGATGTA CGTGAACCTG ATCTGGATCT GGGGCCACCC CGAGGTCTAC
ATCCTGATCC TGCCGGCCTT CGGCATCTTC TCGGAAGTGG TCTCCACCTT CTCGGGCAAG
CGCCTGTTCG GCTACGCCTC GATGGTCTAC GCCACGGTGG TGATCACGAT CCTGTCGTAC
CTCGTGTGGC TGCACCACTT CTTCACCATG GGCTCGGGCG CCAGCGTGAA TTCGTTCTTC
GGCATCACGA CGATGATCAT CTCGATCCCG ACGGGCGCGA AGATCTTCAA CTGGCTCTTC
ACCATGTACC GCGGCCGCAT CCGCTTCGAG CTGCCCATGA TGTGGACCAT CGGCTTCATG
ATCACCTTCG TGATCGGCGG CATGACGGGC GTGCTGCTCG CGGTGCCCCC GGCCGACTTC
GTGCTGCACA ACAGCCTCTT CCTGATCGCC CACTTCCACA ACGTGATCAT CGGCGGCGTG
CTGTTCGGCA TGCTGGCGGG CATCACCTAC TGGTTCCCCA AGGCCTTCGG CTACAAGCTC
GATCCGTTCT GGGGCAAGTG CTCGTTCTGG TTCTGGCTGG TGGGCTTCTG GTTCGCGTTC
ATGCCGCTGT ACATCCTGGG CCTGATGGGC GTCACGCGCC GCATGAGCCA CTTCCAGGAC
ATGTCGCTGC AGATCTGGTT CCAGGTGGCG GCCTTCGGCG CCGTGCTGAT CGCGCTGGGC
ATCGCCTCGT TCATCATCCA GCTGGTGGTG AGCTACATCC GGCGCGATTC GCTGCGCGAC
ACCACGGGCG ACCCGTGGAA CGGCCGCACG CTCGAATGGT CGACCTCGTC GCCGCCGCCG
GCCTACAACT TCGCGTTCAC GCCGCGCATC CACGACAACG ACGCCTGGAC CGACATGAAG
CGCCGCGGCT ACAGCCGCCC GGTCGACGGC TTCACGCCCA TCCACATGCC CAAGAACACG
GCTGCCGGCT TCATCATCGC GGCGCTGGCC GGCACCTGCG GCTTCGCGCT GATCTGGCAG
ATGTGGCTGG TGGCGGGCGT GGCCTTCTTC GCCATGCTGG CGGCCGTGAT CATCCACACC
TTCAACTACA AGCGCGACTA CCACATCCCC GCGGAAGAGG TCGTTCGCAC CGAGGACGAA
CGCACCCGCC TCCTGGCAGC AGCCCATGTC TGA
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| Protein sequence | MTMFENLDLT KLIFGRLTWE AIPYHEPILL VTFIAVVLGG LALLGAITYY KVWGTLWRDW
ITSIDHKKIG IMYIILGLVM LLRGFSDAIM MRAQQAVAFG DNAGFLPPHH YDQIFTAHGV
IMIFFVAMPL VTGLMNFVVP LQIGARDVAF PFLNNFSFWM TTFGAGLVMA SLFVGEFAKT
GWLAYPPLSG LLFSPDVGVD YYIWSLQIAG VGTLLSGVNL LATIVKMRAP GMTMMKMPVF
TWTALCTNVL IVAAFPVLTA VLALLSLDRY VGTNFFTNDL GGNAMMYVNL IWIWGHPEVY
ILILPAFGIF SEVVSTFSGK RLFGYASMVY ATVVITILSY LVWLHHFFTM GSGASVNSFF
GITTMIISIP TGAKIFNWLF TMYRGRIRFE LPMMWTIGFM ITFVIGGMTG VLLAVPPADF
VLHNSLFLIA HFHNVIIGGV LFGMLAGITY WFPKAFGYKL DPFWGKCSFW FWLVGFWFAF
MPLYILGLMG VTRRMSHFQD MSLQIWFQVA AFGAVLIALG IASFIIQLVV SYIRRDSLRD
TTGDPWNGRT LEWSTSSPPP AYNFAFTPRI HDNDAWTDMK RRGYSRPVDG FTPIHMPKNT
AAGFIIAALA GTCGFALIWQ MWLVAGVAFF AMLAAVIIHT FNYKRDYHIP AEEVVRTEDE
RTRLLAAAHV
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