| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4039 |
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| Symbol | |
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| ID | 7974605 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4282349 |
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| End bp | 4283044 |
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| Gene Length | 696 bp |
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| Protein Length | 231 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794626 |
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| Product | polar amino acid ABC transporter, inner membrane subunit |
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| Protein accession | YP_002945919 |
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| Protein GI | 239817009 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCCTGT TCGACTATTC GCTGCTCTTG ACCGGCAAGT ACCACGACAT GCTGGTCGCG
GGCCTGTGGC TGTCGCTGCA GCTGCTCGCG GCCTCGCTCG TGCTGGCGCT GCCGATCGCG
CTGGTGGTGG CGCTCTTGCG CCTTTCGCCG CTCGCGCCGC TGCGCTGGCT CGGCTTTGCG
TATGTGGAGA GCATCCGCAA CATCCCGCTG CTCGCGCACA TGCTGTTCTG GTACTTCGGC
GCGCCCGAGC TGCTGCCCGA GGGCATCAAG CAGTGGCTCT ATGCGGGCCA CATCGAGGCC
TACAGCGCCA TCATCGCGCT GTCGCTCTAC ACGGCCGCCT TCATGGCGGA AGACATCCGC
AGCGGCATCC GCGCGATTCC CACGGTGCAG CTCGAGGCCG GCCGCGCGCT GGGCTTCAGC
TTCCTGGGCA CCATGCGCCG CGTGGTGCTG CCGCAGGCGC TGCGCGTGAC GGTGCCGCCG
CTGATCTCGC AGACGCTGAG CCTGTGGAAG AACACCTCGA TCGCCACCGT GATCGGCGTG
GCCGAGCTGA TGTACCAGGC CGGGCAGGTC GAGAGCGCGA GCTTCCGCAG CTTCGAATCG
TTCGCGTTCG CGAGCGCGGC GTACCTGACG GTGTCGCTGG CCATCACCGG CCTGGCGACC
TGGTACCACC ACCGGTTCCC GGTGCGGACC ATTTAG
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| Protein sequence | MPLFDYSLLL TGKYHDMLVA GLWLSLQLLA ASLVLALPIA LVVALLRLSP LAPLRWLGFA
YVESIRNIPL LAHMLFWYFG APELLPEGIK QWLYAGHIEA YSAIIALSLY TAAFMAEDIR
SGIRAIPTVQ LEAGRALGFS FLGTMRRVVL PQALRVTVPP LISQTLSLWK NTSIATVIGV
AELMYQAGQV ESASFRSFES FAFASAAYLT VSLAITGLAT WYHHRFPVRT I
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