Gene Vapar_4033 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4033 
Symbol 
ID7974599 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp4276998 
End bp4277675 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content68% 
IMG OID644794620 
ProductDNA repair protein RadC 
Protein accessionYP_002945913 
Protein GI239817003 
COG category[L] Replication, recombination and repair 
COG ID[COG2003] DNA repair proteins 
TIGRFAM ID[TIGR00608] DNA repair protein radc 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCATTCA AGGATCTCCC CGCCCACGCC CGCCCGCGCG AAAAGCTCAT CGCGCGGGGA 
GCCGCCGCGC TGGCCGACGC CGAGCTGCTG GCGTTGCTGC TGCGCACCGG CGTGGCGGGA 
AAAAACGTGC TCCAGCTCGC GCAGGAGCTG CTCGACCACT TCGGCGGCCT TTCGGGCCTG 
CTGCAGACGA GCGCCGAGGA CCTGAAGGTG ATCAAGGGCA TGGGCGGCGA CGCCAAGCGC 
GCCGAGCTCA TCGCCGTGCT CGAACTGGCG CGCCGCGCCA TGGCCGAGCG CCTGAAGGAG 
CGCACGGTGT TCGACTCGCC CGGCACCGTC AAGCAGTACC TGCAGCTGCA CATCGGATCG 
CGCCCCTACG AGGTGTTCGC GGTGCTGTTT CTCGATGCGC AGCACCGGCT GATCGTGCTG 
GAGGAGCTGT TTCGCGGAAC ACTCACCCAG ACCAGCGTCT ACCCGCGCGA AGTGGTCACG 
CGTGCGCTGC ACCACCAGGC CGCGGCCGTG GTGCTGTCGC ACAACCATCC GAGCGGCAGC 
ATCGAGCCCT CGCGGGCCGA CGAGTCGCTC ACGCAGACGC TCAGGGCCGC GCTTTCGCTG 
ATCGACGTGC GCGTGCTCGA CCATGTGATC GTCAGTGCCG GCCAGAGCTA TTCGATGGCC 
GAGAAAGGGC TGCTCTGA
 
Protein sequence
MAFKDLPAHA RPREKLIARG AAALADAELL ALLLRTGVAG KNVLQLAQEL LDHFGGLSGL 
LQTSAEDLKV IKGMGGDAKR AELIAVLELA RRAMAERLKE RTVFDSPGTV KQYLQLHIGS 
RPYEVFAVLF LDAQHRLIVL EELFRGTLTQ TSVYPREVVT RALHHQAAAV VLSHNHPSGS 
IEPSRADESL TQTLRAALSL IDVRVLDHVI VSAGQSYSMA EKGLL