| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4032 |
|---|
| Symbol | |
|---|
| ID | 7974598 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4276445 |
|---|
| End bp | 4276888 |
|---|
| Gene Length | 444 bp |
|---|
| Protein Length | 147 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644794619 |
|---|
| Product | peptidylprolyl isomerase FKBP-type |
|---|
| Protein accession | YP_002945912 |
|---|
| Protein GI | 239817002 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1047] FKBP-type peptidyl-prolyl cis-trans isomerases 2 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCACG TTGTGACTTC CGGCTCGTTC CTGACCCTGC ATTACCGGCT GGCCGGTCCG
GCGGGCGACA TCATCAACAC CTTCGCCGAC AAGCCCGCGA CCCTGTCGCT GGGCACCGGC
GAGCTCTCGC CAGCCATGGA GCAGCGGCTC ATGGGCCTGG AAGAGGGCAC CCATGCCACC
TTCGAGCTGC CCGCCGGCGA GGCCTTCGGC GAGCGCAATC CCGAGATGCA GCAATGGGTG
GCCAGGAAGC TGCTCGCGCA GATGGGCGAC CCTGACGAGC AGTACGCGGT TGGCGACGTG
GTGCAGTTCC CCACGCCCGA TGGCGCGGGC AGCTATGCGG GCGCGGTGGT CGAATCGAAC
GAGACCGCGG TGCGCTTCGA CTTCAACCAT CCGCTGGCCG GGCAGCCCGT GACCTTCGAG
GTCCGGCTGA TCGGTGTCCT ATGA
|
|---|
| Protein sequence | MSHVVTSGSF LTLHYRLAGP AGDIINTFAD KPATLSLGTG ELSPAMEQRL MGLEEGTHAT
FELPAGEAFG ERNPEMQQWV ARKLLAQMGD PDEQYAVGDV VQFPTPDGAG SYAGAVVESN
ETAVRFDFNH PLAGQPVTFE VRLIGVL
|
|---|
| |