Gene Vapar_4024 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4024 
Symbol 
ID7974589 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp4267905 
End bp4268576 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content62% 
IMG OID644794610 
Productpeptidase M50 
Protein accessionYP_002945904 
Protein GI239816994 
COG category[R] General function prediction only 
COG ID[COG1994] Zn-dependent proteases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.684648 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGATATTT CCAACCTGAT ACAGACCGTA CTTATTTACG CTTTGCCCGT GGTCTTTGCG 
ATCACGGTGC ACGAGGCGGC GCATGGCTAT GTGGCGCGCC ACTTCGGCGA CAACACGGCC 
GAGGCCATGG GCCGCGTCAC GCTCAACCCG ATCAAGCACA TCGACCCCAT CGGGACCATC 
CTGATGCCAC TGATGCTGTA CTTCGCAACC TCCGGGGCCT TCCTGTTCGG CTATGCCAAG 
CCGGTGCCGG TGAACTTCGG GCGCCTTCGC CATCCGAAGC GCGACATGAT CTGGGTGGCT 
CTGGCAGGGC CTGCGTCCAA TTTCGTGCAG GCCATCCTCT GGGCGCTGGT GCTCGTGGGG 
CTGGTAGCGG CCGGCATCGA TGAAACCTTT TTCATCAAGA TGGCGCAGGG CGGTGTGCTG 
GTCAACCTCG TGATGTGGGC CTTCAATCTC TTTCCGCTGC CTCCGCTCGA TGGCGGCCGC 
GTTCTTGCAG GCCTGCTGCC CAACGGACCG GCGCAGAATT TCCTCGCGCG CATCGAGCCC 
TTCGGTTTCT TCATCGTGAT GGGCCTGGTG CTCGCGGGCA TCGTCAGCAC CTTCTGGCTG 
CGTCCGCTGA TGGACTTCGG CTACATGGCC ATCAACCTGC TCATCTCTCC GCTCACGGCT 
TTGCTGCGTT AA
 
Protein sequence
MDISNLIQTV LIYALPVVFA ITVHEAAHGY VARHFGDNTA EAMGRVTLNP IKHIDPIGTI 
LMPLMLYFAT SGAFLFGYAK PVPVNFGRLR HPKRDMIWVA LAGPASNFVQ AILWALVLVG 
LVAAGIDETF FIKMAQGGVL VNLVMWAFNL FPLPPLDGGR VLAGLLPNGP AQNFLARIEP 
FGFFIVMGLV LAGIVSTFWL RPLMDFGYMA INLLISPLTA LLR