| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4010 |
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| Symbol | |
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| ID | 7974575 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4253541 |
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| End bp | 4254758 |
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| Gene Length | 1218 bp |
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| Protein Length | 405 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644794596 |
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| Product | urea ABC transporter, permease protein UrtC |
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| Protein accession | YP_002945890 |
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| Protein GI | 239816980 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR03408] urea ABC transporter, permease protein UrtC |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAGG TTGTGTTGCC AACCAAAGGT CCGCTGTTGA GCGGCAAGGG CTGGACGGCC
TTCTTCGTCG CGCTGATCGT GGTGTGCGCG GTGGCACCGG TGCTCAACAT GGTGGTGCCG
GCCGGCAGCC CGCTGCACAT GAGCGACTAC GCGGTGGCAC TGGTCGGCAA GATCATGTGC
TACGCGATCT GCGCGCTGGC CATGGACCTG ATCTGGGGCT ACACCGGCAT CCTTTCGCTG
GGCCACGGCC TCTTCTTTGC GCTCGGCGGC TACATGATGG GCATGTACCT GATGCGCCAG
ATCGGCCGCG ACGGCAACTA CAAGAGCGAC CTGCCGGACT TCATGGTGTT CCTCGACTGG
AAGACGCTGC CCTGGCACTG GACCTTCAGC GACAGCTTCA TTGCCACGCT GGTGCTGATC
GTCGCGGTGC CGGGCCTCAT TGCCTTCGTG TTCGGCTTCT TCGCCTTCCG CTCGCGCATC
AAGGGCGTGT ATTTCTCGAT CATCACGCAG GCCATGACCT TTGCCGCGAT GCTGCTGTTC
TTCCGCAACG AGACGGGCTT TGGCGGCAAC AACGGCTTCA CCGACTTCAA GCGCATCCTG
GGCATTCCGA TCGCCACGCA GGAAATGCGC ATGACGCTCT TCGCGCTCAC AGGCCTCACG
CTGCTGGGCT TCTTCCTGTT TGCGAAGTGG CTCATCGCAA GCAAGTTCGG CCGCGTGCTG
CAGGCCATCC GTGATGCTGA AACGCGCGTG ATGTTCTCGG GCTACAACCC GCTGCCCTAC
AAGCTCACGA TCTGGGTCAT CTCGGCCGTG ATGTGCGGCG TGGCGGGTGC GCTGTACGTG
CCGCAGGTCG GCATCATCAA CCCCGGCGAG ATGAGCGCGG CCAACTCCAT CGAGATCGCG
ATCTGGGCCG CGGTGGGCGG GCGCGCGACG CTGATCGGGC CGATCATCGG CGCCTTCATC
GTCAACGGCG CGAAGAGCTG GCTCACGGTG GCCTACCCCG AGTACTGGCT GTACTTCCTG
GGTGCCGTGT TCATTGCCGT CACCCTGTTC CTGCCGAACG GCATCGTGGG CCTGGTGAAG
AAATGGCTGT CGCGTGAAAA GGCGGCGCCG AGCGCCGGCC GAGAGGAAGC ACAGCGCGCC
ATGGCTGCCG CGCAAGGCGT GGAGCCGGAG GCGCTGCACG CACCGCTGGT GGCCGAAGTG
AAGGGAGCGC GTGCATGA
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| Protein sequence | MSKVVLPTKG PLLSGKGWTA FFVALIVVCA VAPVLNMVVP AGSPLHMSDY AVALVGKIMC
YAICALAMDL IWGYTGILSL GHGLFFALGG YMMGMYLMRQ IGRDGNYKSD LPDFMVFLDW
KTLPWHWTFS DSFIATLVLI VAVPGLIAFV FGFFAFRSRI KGVYFSIITQ AMTFAAMLLF
FRNETGFGGN NGFTDFKRIL GIPIATQEMR MTLFALTGLT LLGFFLFAKW LIASKFGRVL
QAIRDAETRV MFSGYNPLPY KLTIWVISAV MCGVAGALYV PQVGIINPGE MSAANSIEIA
IWAAVGGRAT LIGPIIGAFI VNGAKSWLTV AYPEYWLYFL GAVFIAVTLF LPNGIVGLVK
KWLSREKAAP SAGREEAQRA MAAAQGVEPE ALHAPLVAEV KGARA
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