| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4009 |
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| Symbol | |
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| ID | 7974574 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4252487 |
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| End bp | 4253365 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794595 |
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| Product | urea ABC transporter, ATP-binding protein UrtD |
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| Protein accession | YP_002945889 |
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| Protein GI | 239816979 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4674] Uncharacterized ABC-type transport system, ATPase component |
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| TIGRFAM ID | [TIGR03411] urea ABC transporter, ATP-binding protein UrtD |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACACCCG ACCTGATGGA AGCCGGCGCC GAGCGCGCCG CCCGCGCCAA GGGCATGCAC
CACGCGGGCG GCAGCACCGA ATCGGGCGGC CGTTCCGCGG ACTTCGGCCG CATCGCAACG
CCGGGCGAAG TGGACGTGAC GCACGGCCGC ATCCTCTACC TCGAGGACGT GAGCGTGAGC
TTCGACGGCT TCAAGGCCAT CAACAAGCTG TCGCTCGACA TTGCGCCGGG CGAGCTGCGC
TGCATCATCG GCCCGAACGG TGCGGGCAAG ACCACGATGA TGGACATCAT CACCGGCAAG
ACGCGGCCCG ACGAGGGCAC GGTGTTCTTC GGCAGCACCA TCGACCTGCT GCGCCATCGC
GAGGCCGACA TCGCGCAGCT GGGCATCGGC CGCAAGTTCC AGAAGCCGAC GGTGTTCGAG
CATCTCACGG TGTTCGAGAA CCTCGAGCTC GCGCTCAAGA CCAACAAGGG CGTGCGCGCG
TCGATGCTGT TCAGGCTCGA CTCGGCGCAG AGCGATCGGC TCGCCGAGGT GCTGCAGACC
ATTCACCTGG CCGACAGCGT GTCGCGCCTG GCCGGCAACC TGAGCCATGG CCAGAAGCAG
TGGCTCGAGA TCGGCATGCT GCTGATGCAG GACCCGAAGC TGCTGCTGCT CGACGAGCCC
GTGGCCGGCA TGACCGACGA GGAAACGGCG CGCACGGCCG AGCTGTTTCT CACGCTCAAG
GGCAAGCATT CGCTGATGGT GGTGGAGCAC GACATGAGCT TCATCCGCAC CATTTCCGAG
ATCGTCACCG TGCTGTGCGA CGGGTCCGTG CTGGCGCAGG GTACGCTGGA CGAAGTGCAG
GCAGATGAAC GCGTGATCGA GGTCTATCTT GGGCGCTGA
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| Protein sequence | MTPDLMEAGA ERAARAKGMH HAGGSTESGG RSADFGRIAT PGEVDVTHGR ILYLEDVSVS
FDGFKAINKL SLDIAPGELR CIIGPNGAGK TTMMDIITGK TRPDEGTVFF GSTIDLLRHR
EADIAQLGIG RKFQKPTVFE HLTVFENLEL ALKTNKGVRA SMLFRLDSAQ SDRLAEVLQT
IHLADSVSRL AGNLSHGQKQ WLEIGMLLMQ DPKLLLLDEP VAGMTDEETA RTAELFLTLK
GKHSLMVVEH DMSFIRTISE IVTVLCDGSV LAQGTLDEVQ ADERVIEVYL GR
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