| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4008 |
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| Symbol | |
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| ID | 7974573 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4251284 |
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| End bp | 4251976 |
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| Gene Length | 693 bp |
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| Protein Length | 230 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644794594 |
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| Product | urea ABC transporter, ATP-binding protein UrtE |
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| Protein accession | YP_002945888 |
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| Protein GI | 239816978 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0410] ABC-type branched-chain amino acid transport systems, ATPase component |
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| TIGRFAM ID | [TIGR03410] urea ABC transporter, ATP-binding protein UrtE |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCTGACAG TCAAAAACAT CCACCAGTAC TACGGCGGCT CCCACATCCT CAGAGACGTG
AGCTTCGAGG CCACGCTGGG CAAGGTCACC GTATTGCTGG GCCGCAACGG CGTAGGCAAG
ACCACGCTGC TCAAGTCGCT CATGGGCTTG GTGCCCATCA AGAGCGGCAG CATCGAACTC
GAAGGCAAGC CAATCCACAA GGCCACGCCT TACGACAGGG CAAGAGCAGG CATCGGCTTC
GTCCCCCAGG GCAGAGAGAT CTTTGCCAGG CTCACGGTCG AGGAAAACCT GCGCATGGGC
CTGGCCTACA AGAGCGGCAG CACGCCCATT CCGTCGGAGC TGTTCGACCT GTTCCCCGTG
CTCAAGCAGA TGATCAACCG GAGGGGCGGC GACCTCTCGG GCGGCCAGCA GCAGCAGCTT
GCGATCGCCC GCGCGCTGGC GCCCAAGCCC AAGCTCTTGA TCCTCGACGA GCCCACCGAA
GGCATCCAGC CCAGCATCAT CAAGGACATC GGCCGCGTCA TCCGCATGCT GGCCGACCGC
GGCGACATGG CCATCGTGCT GTGCGAGCAG TACTACGACT TTGCGCAGGA GCTGGCCGAC
GACTACCTCG TGATGGAGCG CGGCGAGGTC ATTGCGCGCG GCCTCGGCAA GGACATGGAA
GCGCAGGGCG TGCGCCAACT CGTCGCGATC TGA
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| Protein sequence | MLTVKNIHQY YGGSHILRDV SFEATLGKVT VLLGRNGVGK TTLLKSLMGL VPIKSGSIEL
EGKPIHKATP YDRARAGIGF VPQGREIFAR LTVEENLRMG LAYKSGSTPI PSELFDLFPV
LKQMINRRGG DLSGGQQQQL AIARALAPKP KLLILDEPTE GIQPSIIKDI GRVIRMLADR
GDMAIVLCEQ YYDFAQELAD DYLVMERGEV IARGLGKDME AQGVRQLVAI
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