| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4007 |
|---|
| Symbol | |
|---|
| ID | 7974572 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4249898 |
|---|
| End bp | 4251157 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644794593 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002945887 |
|---|
| Protein GI | 239816977 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAACGCCT CCCCACCCGC GCTGGACGGC GCGGACACCG ACATTCCCGT TGTTTCCCCC
GCCGCACGGC CCGTGAATTT CCTGCGCGCC GTGCTTGCGC TCGGCGTCGG CGGCTTCGCC
ATCGGCACCG GCGAGTTCGT GATCATGGGC CTCTTGCCTG AAGTGGCCAA GGACATCGAC
GTCAGCATTC CCCAGGCCGG CCACGTCATC AGCGCCTATG CGCTCGGCGT GGTCATCGGC
GCCCCGGTGC TCGCGGTGCT GGCCGCCGGC TGGCGCCGCC GCGCGCTGCT GATCGCGCTC
ATGGCCGTGT TTGCCGCCGG CAACTTCGCG AGCGCGATGG CGCCGGGCTA CCTGTCGCTC
AACCTGCTGC GCTTTGCCAC CGGGCTGCCG CACGGCACCT ACTTCGGCGT GGCCGCGCTG
GTGGCCGCCA CGCTCGCGCC GCCCGGGCGC CGGGCGCGCG CCGTGGGCCT CGTGATGCTG
GGGCTCACCG GCGCCACGCT GGTCGGCGTG CCGATCGCGG CCTGGCTCGG CCAGCTGTTC
GGCTGGCGCG CCGCCTTCGT GTTCGTCGGC CTCATCGCGC TGGTGGCCGT GGCGCTGCTG
CGCCGCGACA TCCCCGACCT GGCGCCGCCC GCAGGCGCCA GCCCCTGGCG CGAGCTCGGC
GCGCTCAAGC GCAAGCAGGT GTGGTTCACG CTCGGCATCG GTGCCATCGG CTTCGGCGGC
ATGTTCTCGG TGTTCAGCTA CATCAAGCCC ACGCTGATCG AAGTTGCGGG CCTGCCGCTG
GGTGGCGTGC CGTTCGTGCT CGCGCTGTTC GGCCTGGGCA TGGTCACCGG CAACCTCGTC
GGCTCGCGCC TGGCCGACAA GTCGCTGATG CGCACCATCG GCGGCCTGCT CGTCTATGCG
GCGCTGGTGC TCGCGATGTT CTCGTTCGCG GCGCACCATG TGGTCGCCGC GGCGGTCAAC
GTGTTTCTCA TCGGCACCAC CGTGGCCATC GGACCGGCGC TGCAGATCCG CCTGATGGAC
GTGGCCGGCG ACGCGCAGAC GCTCGCCGCG GCGCTCAACC ACTCGGCCTT CAACATGGCC
AATGCGCTGG GCGCCTGGCT CGGCGGCGTG GCCATTGCGG CCGGGCTGGG CTGGACCTCG
ACCGGGTGGG TGGGTGCGCT GCTCGCGCTC GCGGGCATGG GGGTGTTCGG CTGGGCGATC
GCGAGCGCGC GTGCCGAGGC GCGGCCGGGC AAGATCGCCT GCGAAGGTTC GGCGGGCTAG
|
|---|
| Protein sequence | MNASPPALDG ADTDIPVVSP AARPVNFLRA VLALGVGGFA IGTGEFVIMG LLPEVAKDID
VSIPQAGHVI SAYALGVVIG APVLAVLAAG WRRRALLIAL MAVFAAGNFA SAMAPGYLSL
NLLRFATGLP HGTYFGVAAL VAATLAPPGR RARAVGLVML GLTGATLVGV PIAAWLGQLF
GWRAAFVFVG LIALVAVALL RRDIPDLAPP AGASPWRELG ALKRKQVWFT LGIGAIGFGG
MFSVFSYIKP TLIEVAGLPL GGVPFVLALF GLGMVTGNLV GSRLADKSLM RTIGGLLVYA
ALVLAMFSFA AHHVVAAAVN VFLIGTTVAI GPALQIRLMD VAGDAQTLAA ALNHSAFNMA
NALGAWLGGV AIAAGLGWTS TGWVGALLAL AGMGVFGWAI ASARAEARPG KIACEGSAG
|
|---|
| |