| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4000 |
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| Symbol | |
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| ID | 7974565 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4242495 |
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| End bp | 4243403 |
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| Gene Length | 909 bp |
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| Protein Length | 302 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644794586 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002945880 |
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| Protein GI | 239816970 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0890714 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGGCAG CGATCGAAGC GGGCCTGAAG CGCGCGCACT TCAAGGACGT GCGCCTGCCG
GTGCTGCTTT TGCTGCCGCA GCTCGCGATC CTGCTGTTCT TCTTTTTCAT TCCGTCGTTC
CGCGCGCTCG GGCAGGCCTT CTTCCTGTCC GATCCGTTCG GCAACACGGT GCACTTCGTC
GGCTTCGACA ACTTTGCGCA GCTGCTGCAA AGCGCCACGT ACCACGAGTC GGTGCAGGTC
ACGGTGGTGT TCACCATTTT GCAGAACCTG CTGACCATCG CGGTGGCGCT GGTGCTGGCC
TTTGCGAGCG ACCGCGTGAT CCGCGGCCGC GGCGTCTACA AGGCGATCAT CCTGCTGCCC
TATGCCATTG CACCGGTCAT CGCAGGCATC CTGTGGGCCT TTCTTTTCAA CCCCGCAGTC
GGTCCGCTCG CGCAGCTGCT GCATGCGATC GGCCTCGCGT GGGACCCGAA CCGCGTGGGC
TCGGACGCGA TGGTCCTGGT CATCCTGGCG GCCTCGTGGA AGCACGTGTG CTACGACTAC
ATCTTTCTGC TGGCCGGCCT GCTGGCGGTG CCTTCTTCCT TGATGGAGGC GGCGGCGGTC
GATGGCGCGG GGCCGCTTCG GCGCTTCTTC ACCATCGGGT TGCCGCTGCT CATGCCCACG
ATGTTCTTCC TGGCCGTGAT GAACTTCGTC TACGGCTTCT TCGAGATCTT TGCCATCGTC
GATGCGGTCA CGCAGGGCGG GCCGGCGGGC GCGACCAACG TGCTGGTGTT CAAGGTGTAT
GTCGACGGCT TCATCAACCT GGACCTCGGC TCGTCGGCGG CGCAGTCGGT CATCCTGATG
ATCTTCGCGC TGCTGATGAC ATTGCTGCAG TTCCGCTACG TGGAGCGGCG CGTGAGCTAC
GACGTATGA
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| Protein sequence | MAAAIEAGLK RAHFKDVRLP VLLLLPQLAI LLFFFFIPSF RALGQAFFLS DPFGNTVHFV
GFDNFAQLLQ SATYHESVQV TVVFTILQNL LTIAVALVLA FASDRVIRGR GVYKAIILLP
YAIAPVIAGI LWAFLFNPAV GPLAQLLHAI GLAWDPNRVG SDAMVLVILA ASWKHVCYDY
IFLLAGLLAV PSSLMEAAAV DGAGPLRRFF TIGLPLLMPT MFFLAVMNFV YGFFEIFAIV
DAVTQGGPAG ATNVLVFKVY VDGFINLDLG SSAAQSVILM IFALLMTLLQ FRYVERRVSY
DV
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