| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3999 |
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| Symbol | |
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| ID | 7974564 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4241550 |
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| End bp | 4242470 |
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| Gene Length | 921 bp |
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| Protein Length | 306 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644794585 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_002945879 |
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| Protein GI | 239816969 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0395] ABC-type sugar transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0908917 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTTGAAC GCGCTCCCGT TCTCGACGGC ATCTGCCACG CCATCCTGCT GGTGGGCGTG
GCCTTTGTCT GCGTGCCGCT CTACCTGGCC TTCGTCGCAG GCTCGCTCAG CATTGCCGAG
GTGCAGCAGG TGCCGCTGCC CTGGCTGCCC GGCGACCAGT TCGTGCAGAA CCTGCGCACC
GCATGGATGC AGGCCAACTT TGGCCGGCTG TTCTTCAATT CGTTCATCGT GGCGGCGGGC
ATCACGGTGG GCAAGATCGC GGTGTCGCTG CTGTCGGCCT TTGCCATCAC CTACTTCCGT
TTCCGTTTTC GCATGACGGC GTTCTGGCTC ATCTTCGTGT CGCTGATGCT GCCGATCGAG
GTGCGCATCT CGCCCACCTA CGAATCGGTG GCGAATGCGG CGCTGCCGCT GCAGTGGCTG
GTGGAGGCGC TGCACCTTTC GTCGGCATGG AATGCCATCA CGGGCCACAC CATCGACATC
CAGCTGCAGT GGAACATGGT CGACACCTAC CCGGGCCTGA TCTTGCCGCT GATCGCCTCG
GCCTCGGCCA CCTTCCTGTT CCGCCAGTTC TTCCTCACGG TGCCCGACGA GCTGTGCGAG
GCGGCGCGGA TCGACGGCGC CTCGCCGATG CATTTCTTCT GGACCATCCT GCTGCCGCTG
TCGCGCTCCA ACATCGCGGC ACTCGCGATC ATTCTTTTCC TGTACGGCTG GAACCAGTAT
CTCTGGCCGC TGCTCTTCAC CACCGACAAG GACATGGCCA CCGCGGTGAT CGGCCTCAAG
CACCTGATCC CGCGCGCCGA TTCGCAGCCG GCCTGGAACG TGGCGATGAG CGCCGCGCTC
CTCACGATGC TGCCGCCCAT CATTGTGGTG GTGGCGCTGC AGCGCTCGTT CGTCAAGGGG
CTGGTGGACA GCAGCAAATA G
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| Protein sequence | MVERAPVLDG ICHAILLVGV AFVCVPLYLA FVAGSLSIAE VQQVPLPWLP GDQFVQNLRT
AWMQANFGRL FFNSFIVAAG ITVGKIAVSL LSAFAITYFR FRFRMTAFWL IFVSLMLPIE
VRISPTYESV ANAALPLQWL VEALHLSSAW NAITGHTIDI QLQWNMVDTY PGLILPLIAS
ASATFLFRQF FLTVPDELCE AARIDGASPM HFFWTILLPL SRSNIAALAI ILFLYGWNQY
LWPLLFTTDK DMATAVIGLK HLIPRADSQP AWNVAMSAAL LTMLPPIIVV VALQRSFVKG
LVDSSK
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