Gene Vapar_3993 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3993 
Symbol 
ID7974558 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4235261 
End bp4236631 
Gene Length1371 bp 
Protein Length456 aa 
Translation table11 
GC content70% 
IMG OID644794579 
Producthistidine kinase 
Protein accessionYP_002945873 
Protein GI239816963 
COG category[T] Signal transduction mechanisms 
COG ID[COG4564] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.841388 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCTCC GCACCAAGAT CGTCGCGCTG GCCGTTGCAC CGCTGCTGGT TGCACTGGTG 
CTGGTGGCCC TGGCGGTGCG CCACCAGGAG CATGACCTGG CGCAGCGCGA GCGCGCGCTG
ATCGAGAAAA GCTACATGGC CCAGCGGCGC AGCGAACTGC GCAGCTACGT CGACCTTGCC
GTGAGCACCG TGCGGCCGCT GTACGACGCC GGCCAGGACG ACGAGCAAGC CCGCAGCGAG
GCCCTGCGCC GCCTGGCCGC GCTCGACTAC GGCGACGACG GCTACTTCTT CGTCTACGAC
ATGCAGGGCC GCTCGCTCAT GCATTCGCGC CAGCCCGACC TGGTGGGGCA GAACCTCTGG
GACATGCGCG ACTCGCGCGG CCGCTTCACC ATCCAGGACC TGATCGCGGG CGCGCGCGCG
GGCGGCGGCT ATGTGGAGTA CGAATGGCGC AAGCCCTCCA GCGAGCAGAT GGCGCCCAAG
CTCGGCTACG TCACTGCGCT GCCGCGCTGG AACTGGATGG TCGGCACCGG CCTGTACCTG
GACGACATAG AGACCACCAT GCAGGCGCTC GACCGCCAGA TGAGCGCCAA CGTCACCACC
ACGCTGCTGT GGATCGCCGG CATCGCGGCG CTGTGCCTGG GCGTGGTGAG CGCCACCGGG
CTGCTGCTCA ACCTCAGCGA GCACCGCACG GCCGAGGCCA AGCTGAGGTT GCTGGCGCGG
CGCGTGGTGC AGTCGCAGGA AGAAGAGCGC GGCCACCTCG CGCGCGAGCT GCACGACGGC
ACCAGCCAGA CGCTGGTGTC GGCCAAGCTG CTGATCGAAT CGGCGGTGGA CGCGCTCGAC
CGCGAGCGCC AGCCCGCGCC GCCCGCGCTG AGCAAGGCGC TGCAACGGCT CAACGATTCG
CTGATCGAGG TGCGCCGCAT CTCGCACCGC CTGCGGCCGG CCCTGCTCGA CACGCTCGGC
CTGCCCGCCG CGCTCGAGCG CCTGGGCGAC GAATTCGCCG AAGAGGGCGC CATCGACGCC
TCCATCATGA TCGAGGGCGA GGCCTTCGAA CTCTCGCAGG AGGCCAAGAC CGCGCTCTTT
CGCGTCACGC AGGAGGCGCT CACCAATGTG CGCAAGCACG CGCAGGCGCA CCGCGTGCAC
ATTGCGCTGG GCTTTTCCGA CGAGGACGGC GTGCGCCTTT CGATCGGCGA CGACGGCGTC
GGCTTCGACG TGGAGGCGAT GCAGCTCGAT GCGCGGCGCG GCATCGGCCT GCGCAACATG
CGCGAGCGCA TGGAGTCGAT CGGCGGGCGC CTGGACGTGC AATCGGGCGA AGGCGGAACC
ACCATCGTGG CCGAAGTGCC GGCCCGCAGC GCGAGGCCCG AGCCGGCATG A
 
Protein sequence
MNLRTKIVAL AVAPLLVALV LVALAVRHQE HDLAQRERAL IEKSYMAQRR SELRSYVDLA 
VSTVRPLYDA GQDDEQARSE ALRRLAALDY GDDGYFFVYD MQGRSLMHSR QPDLVGQNLW
DMRDSRGRFT IQDLIAGARA GGGYVEYEWR KPSSEQMAPK LGYVTALPRW NWMVGTGLYL
DDIETTMQAL DRQMSANVTT TLLWIAGIAA LCLGVVSATG LLLNLSEHRT AEAKLRLLAR
RVVQSQEEER GHLARELHDG TSQTLVSAKL LIESAVDALD RERQPAPPAL SKALQRLNDS
LIEVRRISHR LRPALLDTLG LPAALERLGD EFAEEGAIDA SIMIEGEAFE LSQEAKTALF
RVTQEALTNV RKHAQAHRVH IALGFSDEDG VRLSIGDDGV GFDVEAMQLD ARRGIGLRNM
RERMESIGGR LDVQSGEGGT TIVAEVPARS ARPEPA