Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3993 |
Symbol | |
ID | 7974558 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4235261 |
End bp | 4236631 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 644794579 |
Product | histidine kinase |
Protein accession | YP_002945873 |
Protein GI | 239816963 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4564] Signal transduction histidine kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.841388 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACCTCC GCACCAAGAT CGTCGCGCTG GCCGTTGCAC CGCTGCTGGT TGCACTGGTG CTGGTGGCCC TGGCGGTGCG CCACCAGGAG CATGACCTGG CGCAGCGCGA GCGCGCGCTG ATCGAGAAAA GCTACATGGC CCAGCGGCGC AGCGAACTGC GCAGCTACGT CGACCTTGCC GTGAGCACCG TGCGGCCGCT GTACGACGCC GGCCAGGACG ACGAGCAAGC CCGCAGCGAG GCCCTGCGCC GCCTGGCCGC GCTCGACTAC GGCGACGACG GCTACTTCTT CGTCTACGAC ATGCAGGGCC GCTCGCTCAT GCATTCGCGC CAGCCCGACC TGGTGGGGCA GAACCTCTGG GACATGCGCG ACTCGCGCGG CCGCTTCACC ATCCAGGACC TGATCGCGGG CGCGCGCGCG GGCGGCGGCT ATGTGGAGTA CGAATGGCGC AAGCCCTCCA GCGAGCAGAT GGCGCCCAAG CTCGGCTACG TCACTGCGCT GCCGCGCTGG AACTGGATGG TCGGCACCGG CCTGTACCTG GACGACATAG AGACCACCAT GCAGGCGCTC GACCGCCAGA TGAGCGCCAA CGTCACCACC ACGCTGCTGT GGATCGCCGG CATCGCGGCG CTGTGCCTGG GCGTGGTGAG CGCCACCGGG CTGCTGCTCA ACCTCAGCGA GCACCGCACG GCCGAGGCCA AGCTGAGGTT GCTGGCGCGG CGCGTGGTGC AGTCGCAGGA AGAAGAGCGC GGCCACCTCG CGCGCGAGCT GCACGACGGC ACCAGCCAGA CGCTGGTGTC GGCCAAGCTG CTGATCGAAT CGGCGGTGGA CGCGCTCGAC CGCGAGCGCC AGCCCGCGCC GCCCGCGCTG AGCAAGGCGC TGCAACGGCT CAACGATTCG CTGATCGAGG TGCGCCGCAT CTCGCACCGC CTGCGGCCGG CCCTGCTCGA CACGCTCGGC CTGCCCGCCG CGCTCGAGCG CCTGGGCGAC GAATTCGCCG AAGAGGGCGC CATCGACGCC TCCATCATGA TCGAGGGCGA GGCCTTCGAA CTCTCGCAGG AGGCCAAGAC CGCGCTCTTT CGCGTCACGC AGGAGGCGCT CACCAATGTG CGCAAGCACG CGCAGGCGCA CCGCGTGCAC ATTGCGCTGG GCTTTTCCGA CGAGGACGGC GTGCGCCTTT CGATCGGCGA CGACGGCGTC GGCTTCGACG TGGAGGCGAT GCAGCTCGAT GCGCGGCGCG GCATCGGCCT GCGCAACATG CGCGAGCGCA TGGAGTCGAT CGGCGGGCGC CTGGACGTGC AATCGGGCGA AGGCGGAACC ACCATCGTGG CCGAAGTGCC GGCCCGCAGC GCGAGGCCCG AGCCGGCATG A
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Protein sequence | MNLRTKIVAL AVAPLLVALV LVALAVRHQE HDLAQRERAL IEKSYMAQRR SELRSYVDLA VSTVRPLYDA GQDDEQARSE ALRRLAALDY GDDGYFFVYD MQGRSLMHSR QPDLVGQNLW DMRDSRGRFT IQDLIAGARA GGGYVEYEWR KPSSEQMAPK LGYVTALPRW NWMVGTGLYL DDIETTMQAL DRQMSANVTT TLLWIAGIAA LCLGVVSATG LLLNLSEHRT AEAKLRLLAR RVVQSQEEER GHLARELHDG TSQTLVSAKL LIESAVDALD RERQPAPPAL SKALQRLNDS LIEVRRISHR LRPALLDTLG LPAALERLGD EFAEEGAIDA SIMIEGEAFE LSQEAKTALF RVTQEALTNV RKHAQAHRVH IALGFSDEDG VRLSIGDDGV GFDVEAMQLD ARRGIGLRNM RERMESIGGR LDVQSGEGGT TIVAEVPARS ARPEPA
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