| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3990 |
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| Symbol | |
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| ID | 7974555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4232375 |
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| End bp | 4233943 |
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| Gene Length | 1569 bp |
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| Protein Length | 522 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794576 |
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| Product | beta-lactamase |
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| Protein accession | YP_002945870 |
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| Protein GI | 239816960 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1680] Beta-lactamase class C and other penicillin binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.147927 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGTGCT CGATCCGCCG CTCCCTCGCC ACCACCGCCG CGGCACTGGG CCTGGCAGTT
GCATTGGCCT CCTGCGGTGG GGGCGGCGGC GGCGGGGGTG GAGGTGGCGG GGGGATCGGC
ATCGGCGCAC CCTTGCCGCC GACCACGGCG CAGCTGCCGG AGCGCGAGGC GCTGATTGCC
CGCGCACGGC CCCTCGAGCT CAACACGCCC TACGTGCCGC CGCCCGGCAA CGTGCTGGAG
CACCACACCT CCGGCTATGC CAAGACGATG TGTTCTGCCG TGTTCATCAC CGGCATCGAC
CCCGACGTCG CCGCCGAAAG CCTGGGCTAT TTCGTGGGCC CTTATGACCA GCGCAAGAAC
GTCGGCAAGC CTGTGGTCGA CCGCGTGAAG AAGGAGGTTC GCATCTCGAT TCCCAATGGC
CCGACGCTGG TGGCGCGCCA CTTCGGCTCG CAGGGCTGCG TCACGCTGCC GGCCGGCCGG
GACGACGTGT TCTTCACGCC GGTCGAAGTC AGGAGCGCGC TGCCCGACCC CGCCACCCAA
CCCTGGCCGA TGGGCGACGT GCTGCCGGGC GATGCGCCGC CCGCCGAGGT CGACATGGCC
AAGGTGACCC GGGCCGTCGA TGCCGCGTTC GCCGTGCCCG AGGCCTACAC ATCGGCCTTC
GTGGTCACGC ACAAGGGCCG CATCGTCGCC GAGCGCTACA TGAGCGGCAT CGGCCCGGCG
ACGCCGCTCG AATCGTGGTC GATGGGCAAG AGCGTCGTGG CCACGATGAT GGGGGTGCTC
ATCAAGCAGG GCGTGTACAA GCTCGACCAG CCGGCGCCGA TTCCCGAGTG GCAGGGCGCC
GGCGATGCAC GTCAGCAGAT CAAGATCTCC GACATCCTGC AGATGTCGAG CGGCCTGCGC
ATCAAGGCGC CGGACGATCC GGACTTCGAC CCCAACGGCA CCTACCCCGA TCACATCTAC
TACTACACGG GCCGCATCAA CGCCTTCAGC TACGCCGCCA CCCGGCCGCA GCAATGGCCG
CCCGGCGCGG TGGGCCGCTA CCGCAACACC GATCCGGTGC TGGCCAACTA CCTGGTCCGC
CTCGCGGTGG AAAAGCGCGG CGAGGACTAC CTGTCGTTTC CGCAGCGCGC GCTCTTCGAC
AAGATCGGCA TCCGCTCGAT GGTGATCGAG ACCGACCCCT ACGGCAACTT TCTCACGCAG
GGCTACGACT TCATGTCGGC GCGCGACTGG GCACGCCTGG GCAATCTCTA TCTGCAGGAC
GGCATGTGGA ATGGCGAGCG CATTCTTCCC GAGGGCTTCG TCAACTTCGT GAGCAGCGTG
GCGCCCGCCT GGGCCGCGGA CAAGCGCCCG ATCTACGGCG GCTTCTTCTG GATCAATGGA
ATGGGCTCAC TCGCGGTGCC GGCGTCTGCC TACTACATGC TCGGCGCAGG AGGCCAGTTC
GTGCTGGTGA TTCCGTCGCA CGACCTGGTC GTGGTGCGGA TCGGGCATTC GAAGGGAGAG
CGCTTCGCGG GCTCGACGCT GAACCAGGCA TTGGCGCTGC TGACCACCGC GGTGCCCCGC
GTGCGCTGA
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| Protein sequence | MKCSIRRSLA TTAAALGLAV ALASCGGGGG GGGGGGGGIG IGAPLPPTTA QLPEREALIA
RARPLELNTP YVPPPGNVLE HHTSGYAKTM CSAVFITGID PDVAAESLGY FVGPYDQRKN
VGKPVVDRVK KEVRISIPNG PTLVARHFGS QGCVTLPAGR DDVFFTPVEV RSALPDPATQ
PWPMGDVLPG DAPPAEVDMA KVTRAVDAAF AVPEAYTSAF VVTHKGRIVA ERYMSGIGPA
TPLESWSMGK SVVATMMGVL IKQGVYKLDQ PAPIPEWQGA GDARQQIKIS DILQMSSGLR
IKAPDDPDFD PNGTYPDHIY YYTGRINAFS YAATRPQQWP PGAVGRYRNT DPVLANYLVR
LAVEKRGEDY LSFPQRALFD KIGIRSMVIE TDPYGNFLTQ GYDFMSARDW ARLGNLYLQD
GMWNGERILP EGFVNFVSSV APAWAADKRP IYGGFFWING MGSLAVPASA YYMLGAGGQF
VLVIPSHDLV VVRIGHSKGE RFAGSTLNQA LALLTTAVPR VR
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