| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3988 |
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| Symbol | |
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| ID | 7974553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4230872 |
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| End bp | 4231708 |
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| Gene Length | 837 bp |
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| Protein Length | 278 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794574 |
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| Product | Extensin family protein |
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| Protein accession | YP_002945868 |
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| Protein GI | 239816958 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3921] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.377397 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCCTCG GCCATGGCGA TCGATCTTTA TTCAGTTGGC ATTTCATCGA GATCATGGCC
CTGGACCCTT CTGAGCGTCC GGTGAAGCCG GCGCCTTCGC GCCGCAGGCG CTGGCTGCTC
GCCACGGCCG CGGTGTGCGC CGCGCTCGCC GCAGCTGCAT GGGCCGTCGC CACCGGCACC
ATCAAGATTC CCGAGCGCTT CAATCCGTGG GCGCCGCTCG ACGTGGCCGC GGCGCCCAAC
TGGCTGACCG GCTTCAAGCT CGAGCGGGCC CGCCGCGAAC CCGCGCGCTG CCTCGCGGCG
CTGGCGCAAA CCGGCATGCA GTACGACCTG CTGCCCGACC GCGTCACCGG CCCCGGCTGC
GGCTTCGAGA ACGCCGTGCG GCTGCGCTCC GCCGGCGTGC GCCTGGGCAC CTCGCCTTCG
CTGAGCTGCC CGATGGCGCT GTCCTTCTTC ATGTGGGAGC GGCACGCGCT GCAGCCGGCC
GCCAGGCAGC GCTTCGGCCA GCCGGTGATG GCCATCGAGC ACCTCGGCAG CTACGCCTGC
CGCAACGTGA ACCGCGGCGA AGGCGCCGTG CCGGGCGCTT CGCGCAGCCG GCATGCCACG
GCCGATGCGC TGGACGTCGC CGGCCTCACG CTGGCCGACG GCCGCCGCAT CACGGTGCTG
CATGACTGGC CCCGCGACGG CAGTGCCGCA AGCACGGACG ATCCGGCGCC GCTGCTTCTG
CGCGATGCGC ACCGCGGCGC CTGCCGTTTC TTCAATGGCG TGCTGGGCCC CGACTACAAC
GCCGCGCACA AGGACCACTT CCATCTGGAG ACCGGCGGGT ACGGCATGTG CCGCTAG
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| Protein sequence | MGLGHGDRSL FSWHFIEIMA LDPSERPVKP APSRRRRWLL ATAAVCAALA AAAWAVATGT
IKIPERFNPW APLDVAAAPN WLTGFKLERA RREPARCLAA LAQTGMQYDL LPDRVTGPGC
GFENAVRLRS AGVRLGTSPS LSCPMALSFF MWERHALQPA ARQRFGQPVM AIEHLGSYAC
RNVNRGEGAV PGASRSRHAT ADALDVAGLT LADGRRITVL HDWPRDGSAA STDDPAPLLL
RDAHRGACRF FNGVLGPDYN AAHKDHFHLE TGGYGMCR
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