| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3987 |
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| Symbol | |
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| ID | 7974552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4229674 |
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| End bp | 4230867 |
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| Gene Length | 1194 bp |
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| Protein Length | 397 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644794573 |
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| Product | membrane protein-like protein |
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| Protein accession | YP_002945867 |
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| Protein GI | 239816957 |
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| COG category | [S] Function unknown |
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| COG ID | [COG2339] Predicted membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.203091 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCCCGC CCGCCTTCGA AGGCCAGCTG GACCGCGGCG ACTGGCCGAT CGGCACCGAT
TCGTTCTTCC AGCCGCAGCG CGCGGCCTTC TGGCTGCTGG CGGCGCTGAT CGTCAACGGG
CTGTTCTACA CGGTCAACAT GTTCTCGATA GGGTTCCGCG TCGTGCCCGT TACGGCCTTG
CTGGGCATCC TGGTGTGGGG CATCTACACG CTGCTTTTCC TCCTGGTCTT CCGCACGCTG
GACCTGCTCG AGCAGCACCC GCCGGAAGCC TTCGTGCTGG CCTTTGCCTG GGGCGGGCTC
GGCGCCGTCT ACTTTGCCGC GCCGGCGAAC ATCGCCATCC AGAGCCTGTG CGCCAAGCTG
GTGTCGCCGG ATTTCGCGGC GCTCTGGGGG GCCGCCGTCG CGGGGCCGGT CACCGAGGAG
TTCCTGAAGA TCGCCGGCGT CATCCTGCTG GTGCTGGTGG CGCGCAACCA GTTCCAGACC
TACCTGTCGG TACTGATCGT GGGTGCCATG GCAGGGCTGG GCTTCCAGGT GGTCGAGAAC
CTCACGTACA CCGTCAACGC CTCCATGCAC TTTCCGCTCG AGAACCAGGT GTCCCCGGTG
CTCGTCAACC TGCTGACGCG CGGGCTGCTG AGCGGGCTGT GGAGCCATGC GGCCTACACG
ACGATCGCGT CCTTCGGCGT CGCCTGGTTC CTGCTGCATC CGGAGCGTTC GCTGGCGGCG
AGGATCGCCT GCGCCCTGCT GTGCTTCGCA CTCGCGTGGG CGATGCATTT CATCTGGAAC
TCGCCGTGGC TCGAAGACCT CTTCGACGGG GGCTACGGCG ACATGGCCGT GATGCTCGCC
GTCAAGGGCA TTCCCGCGAT GGTTGCGGCC GGGCTCTTCT GGCGAGTTGC CGTGCGCGAG
AACGGCGCCT ACCTGCATGC GCTGGCCGCC TACTTCGTGC CGGAGCGCGA GCTGATCCGT
GACGACGAAT GGATCCGCCT GGGCGCGCCC TTGCAGCGCT ATCGGATCCG CAGGCAGCTG
GGCTGGACCT TCGGGCTGCG AGCCAGGCGG CTGAAGACGC TGCTGCAGCG CGAGCAGCTG
CGGCTGATCC GGAAAGCGAT GACCTATGGG CGCGGAGCGC AAACGCTGCG GCATGAAGTG
GCGATAAGGC GCATACGCGC CGAACTGGAT CCACTCATCG CAACGCAGCC TTGA
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| Protein sequence | MSPPAFEGQL DRGDWPIGTD SFFQPQRAAF WLLAALIVNG LFYTVNMFSI GFRVVPVTAL
LGILVWGIYT LLFLLVFRTL DLLEQHPPEA FVLAFAWGGL GAVYFAAPAN IAIQSLCAKL
VSPDFAALWG AAVAGPVTEE FLKIAGVILL VLVARNQFQT YLSVLIVGAM AGLGFQVVEN
LTYTVNASMH FPLENQVSPV LVNLLTRGLL SGLWSHAAYT TIASFGVAWF LLHPERSLAA
RIACALLCFA LAWAMHFIWN SPWLEDLFDG GYGDMAVMLA VKGIPAMVAA GLFWRVAVRE
NGAYLHALAA YFVPERELIR DDEWIRLGAP LQRYRIRRQL GWTFGLRARR LKTLLQREQL
RLIRKAMTYG RGAQTLRHEV AIRRIRAELD PLIATQP
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