| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3984 |
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| Symbol | |
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| ID | 7974549 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4228047 |
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| End bp | 4228568 |
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| Gene Length | 522 bp |
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| Protein Length | 173 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 644794570 |
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| Product | NLP/P60 protein |
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| Protein accession | YP_002945864 |
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| Protein GI | 239816954 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.499071 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATGACG CCTCCGCACC CACGCCACCT CCCCGCATGC CGCTGGCGCT GCTTCGGCTG
CTCCCGATCG GCGCCTGCCT GCTGGTGCTG GGCTGTGCAG GACCGCGGGC GCCGCAGCCC
GGGGCCGCCT ATGCGCCGCC TCCCGTGCTG ACGGCCGAGC AGTCGAGCAG CGTCGCGATC
CATGCGCTGG GCCTGGTCGG CACGCCGTAC CGCTACGGCG GCAACACGCC GGAGGGCGGC
TTCGATTGCA GCGGGCTCAT CGGCTACGTG TACAGAAGCA GCACGGGCCA GGCCACGCCG
CGCACGGTGG CGCGCATGGC CGGCTTCGGC CGTCCGGTGC CCGCGTCCGA ACTGCGCTCG
GGCGACCTGG TGCTCTTCGG CGCCTCCACG CCGTCGCATG CGGGCATCTA CGTGGGGGCC
GGGCAGTTCG TGCATGCGCC ATCGACGGGC GGCGAGGTTC GGCTCGACCG GCTGGACGGC
GTCTACTGGT CGCGCCAGCC GATGCAGGCG CGCCGGCTCT AG
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| Protein sequence | MHDASAPTPP PRMPLALLRL LPIGACLLVL GCAGPRAPQP GAAYAPPPVL TAEQSSSVAI
HALGLVGTPY RYGGNTPEGG FDCSGLIGYV YRSSTGQATP RTVARMAGFG RPVPASELRS
GDLVLFGAST PSHAGIYVGA GQFVHAPSTG GEVRLDRLDG VYWSRQPMQA RRL
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