Gene Vapar_3982 details

Gene Information

• Locus tag: Vapar_3982
• ID: 7974547
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 4225315
• End bp: 4227381
• Gene Length: 2067 bp
• Protein Length: 688 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 644794568
• Product: carbon starvation protein CstA
• Protein accession: YP_002945862
• Protein GI: 239816952
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1966] Carbon starvation protein, predicted membrane protein

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCACAGCA TCCGCCGCCA CCTGGTGTGG CTCGTCGTGG CCGTGGCCGG CGCATTCGCG 
CTCGGCACCG TGGCCCTCAC GCGCGGTGAA AGCGTCAACG CCCTGTGGGT GGTGACCGCC 
GCGGTCTGCA CCTACCTGAT CGCCTACCGC TACTACAGCC TGTTCATCGC CGAGAAGGTG 
CTGGGGCTGG ACGGCAACCG CAAGACGCCG GCGCACCGCC ACAACGACGG CCTGGACTAC 
GTGCCGACCG ACAAGAACGT GCTGTTCGGC CACCACTTCG CGGCCATTGC GGGCGCCGGT 
CCGCTGGTGG GCCCGGTGCT CGCAGCGCAG ATGGGCTACC TGCCCGGGCT CTTGTGGGTG 
CTGGCGGGCG TGGTGTTCGC GGGCGCGGTG CAGGACTTCA TCATCCTGTT CATCTCCACG 
CGGCGCGACG GCCGCTCGCT CGGCGACCTC GTCAAGCAGG AGATGGGCAC GGTGCCCGGC 
ATGATCGCGC TGTTCGGCAC CTTCATGATC ATGATCATCA TCCTTGCGGT GCTGGCGCTG 
ATCGTGGTGA AGGCGCTGGC CGAATCGCCG TGGGGCACCT TCACCGTGGC GGCCACCATT 
CCGGTGGCGC TCTTCATGGG CGTGTACCTG CGCTACATCC GGCCGGGGCG CATCGGCGAG 
GTGTCGCTGA TCGGCTTCGT GCTGCTGATG CTCGCCATCT TCGGCGGCCA GGCCGTGAGC 
CAGGACCCCG CATGGGCGCC GCTCTTCACC TTCGACGGCA AGGCGCTCAC CTGGATGCTG 
GTGGGCTACG GCTTCGTGGC CGCGAGCCTG CCGGTGTGGC TGCTGCTGGC GCCGCGCGAC 
TACCTGTCGA CCTTCCTGAA GATCGGCACC ATCATCGCGC TGGCGCTGGG CATCGTGTTC 
GTCATGCCCA CGCTGCAGAT GCCGGCGCTC ACGCAGTTTG CGAATGGCGG CGGGCCGGTG 
TGGTCGGGCA GCATGTTCCC GTTCCTGTTC ATCACCATCG CCTGCGGCGC GGTATCGGGC 
TTCCATGCGC TGATCTCCTC GGGCACCACG CCCAAGATGC TCGACAACGA GCGCCATGCG 
CGCTTCATCG GCTACGGCGG CATGCTGGCC GAATCCTTCG TGGCGGTGAT GGCGCTGGTG 
GCGGCTTCGT GCATCGAGCC CGGCATCTAC TTTGCGATGA ACAGCCCGGC CGCGCTGGTG 
GGCAGCACCG CGCAGCAGGC GGCGCAGACC ATCTCGAGCT GGGGCTTCGT GGTCACGCCC 
GAGATGCTGA TGCAAACCGC CAAGGACGTG GGCGAAAGCA CCGTCCTCGG CCGCGCGGGC 
GGTGCGCCGA CGCTGGCCGT GGGCATGGCC CACATCCTCC ACCAGGTGAT CGGCGGGCAG 
GCCATGATGG CCTTCTGGTA CCACTTCGCG ATCTTGTTCG AGGCGCTCTT CATCCTCACG 
GCCGTGGACG CCGGCACCCG CGCCGGCCGC TTCATGCTGC AGGACCTGCT GGGCAGCTTC 
GTGCCCGCGC TCAAGCGCAC CGATTCGCTG GCGGCCAACC TGTTTGCCAC GGCGCTGTGC 
GTGGCGGCCT GGGGCTACTT CCTGTACCAG GGCGTGGTCG ATCCGCTGGG CGGCATCAAC 
ACGCTGTGGC CGCTGTTCGG CATCTCCAAC CAGATGCTGG CCGCGGTGGC GCTGCTGCTG 
GGCGTGGTGG TGCTGTTCCG CATGAAGCGC GAGCGCTATG CCTGGGTGGC GATTGCGCCG 
GCCGCATGGC TCCTGGCGTG CACGCTCACG GCCGGCTGGC AGAAGATCTT CTCGCCCGAT 
CCGAAGATCG GCTTCCTCTC GCATGCAGCC CGCTACACCG AGGGCCTGGC CAACGGGGTG 
CTGGTGGCGC CGGCCAAGAC GCCCGAGGCC ATGTCGCGCA TCGTCTTCAA CGACCGGCTC 
GACGCGGCGC TGTGCGCGCT CTTCATGTTC GTGGTGCTGA GCGTGCTGGT CTACAGCATC 
AAGGCCTGCC TCGCGGCACG CGCGGCCCAC CGGCCGACCG CGCAGGAGAC GCCGTTCGAG 
CCGCTCGCCG CCTCGGCGGC GCGCTGA 

 

Protein sequence

MHSIRRHLVW LVVAVAGAFA LGTVALTRGE SVNALWVVTA AVCTYLIAYR YYSLFIAEKV 
LGLDGNRKTP AHRHNDGLDY VPTDKNVLFG HHFAAIAGAG PLVGPVLAAQ MGYLPGLLWV 
LAGVVFAGAV QDFIILFIST RRDGRSLGDL VKQEMGTVPG MIALFGTFMI MIIILAVLAL 
IVVKALAESP WGTFTVAATI PVALFMGVYL RYIRPGRIGE VSLIGFVLLM LAIFGGQAVS 
QDPAWAPLFT FDGKALTWML VGYGFVAASL PVWLLLAPRD YLSTFLKIGT IIALALGIVF 
VMPTLQMPAL TQFANGGGPV WSGSMFPFLF ITIACGAVSG FHALISSGTT PKMLDNERHA 
RFIGYGGMLA ESFVAVMALV AASCIEPGIY FAMNSPAALV GSTAQQAAQT ISSWGFVVTP 
EMLMQTAKDV GESTVLGRAG GAPTLAVGMA HILHQVIGGQ AMMAFWYHFA ILFEALFILT 
AVDAGTRAGR FMLQDLLGSF VPALKRTDSL AANLFATALC VAAWGYFLYQ GVVDPLGGIN 
TLWPLFGISN QMLAAVALLL GVVVLFRMKR ERYAWVAIAP AAWLLACTLT AGWQKIFSPD 
PKIGFLSHAA RYTEGLANGV LVAPAKTPEA MSRIVFNDRL DAALCALFMF VVLSVLVYSI 
KACLAARAAH RPTAQETPFE PLAASAAR