| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3980 |
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| Symbol | |
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| ID | 7974545 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4222702 |
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| End bp | 4224861 |
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| Gene Length | 2160 bp |
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| Protein Length | 719 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794566 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_002945860 |
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| Protein GI | 239816950 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.348977 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGCTC GCCCGCCTGC CGTGCGTCGC CGCCTTCGCC GCATGCCGCT CTTCCTTGCC
ACCCTTGCCG CACTGCATTG CGCGGCCGAG GCCCAGACCT CGGCCAGCAC GCTGCAGGAG
ATCACCGTCA CCTCCGAGCA GGAGCCCGGC TATGCCCCGT CGGTCGGCAG CACGGCCACG
AAAGGCAGTG CGCCGCTGCG CGACATTCCC CAGGCGGTCA ACGTGCTGCC CGCGCAGCTG
CTGCGGGACC AGGGCGCCAC CTCCATGCAG GACGCGCTGC GCAATGCGCC CGGCGTTTCC
TTCAATGCGG GCGACGGCCA GCGCGACCAG GTGGTGATCC GCGGCTTCAC GGCCATTGCC
GACTGGTTCG TGGACGGCGT GCGCGACGAC GCGCTGTACT TTCGCGACCT GTCGGACACC
GAGCGCATCG AGGTGCTCAA GGGCCCGGCC GCGGTGCTGT ACGGCCGCGG CTCGTCGGGC
GGGCTGATCA ACCGCGTGAC GAAGAAGCCG ATCTTCGAGC GCCCCTTCGG CGAGGTGTCG
CTGGGCCTGG GCACCCATGA CTTCAAGCGG CTCACCGCCG ACCTCAACCG GCCCATCGGC
GAGAACATGG CCTTCCGCCT GAACGTGGCG CGCGAAAAGT CGGGCAGCTG GCGCGACCAG
CAGTTCATCG ACCGCTACAG CATCGCGCCC TCGCTGGCCA TGAAGTTCAG CCCGCAGACC
GACCTGCTGC TGCAATACAC CAACGCCTAC GACCAGCGGC TGACCGACTT CGGCATTCCG
GCGCTCAACG GCCGCCCGGT GAACGTGCCG ATCGGCACCT ACTACGGCTC GGCCTTCGCG
AAGCGCGACG ACGCCACCAC CACGCGCGTG CAGTCCTTCA CCGCCACGCT CAACCACCGC
TTCAGCGACA CGCTGAGCCT GCGCAACACC ACGCGCTACT ACAGCTACAA ACTCGACCGC
TTCAACACGC TGCCCAGCGG CACCACCGAC CCGGTGCGCA TGACCGTCGG CCGCACCCGC
GGCTTCGTCG ACCGCGACGA GAGCGGCTGG TTCAACCAGA CCGACCTGAC ATGGCGCAAC
GAGCTCGGCG GCTTCAAGCA GGAGTGGCTG ATCGGCGCCG AACTCGGCAA GCAGGACAAG
CGCGCGTACA CGGTGTCCTC GGCCACCGGC TTCGAGCGCG TGAGCATCCT GAACCCGGTC
TCCGCGCCGC CGCCGATCCC GCTCGCAAGC TACCTGGGCA ACGGCGCGAT TCCGAGCAAC
ACCACCTTCA AGACGGCCGC GCTCTATGCG CAGGACCAGA TCACGCTGGC GCCCCAGTGG
AAGGCGCTGG TCGGCGGACG CTACGACGAC TTCCGCCAGG AGACTTCCTT CGAGCGCACG
CTGGCTCCCT TCTCGCGCAC CGACCGCAAG TTCAGCCCGC GCGCGGGCCT GGTCTGGCAG
CCGAGCGACT CGCAGTCCTA CTACGTGTCG TACAGCCGCT CGTTCCAGCC TTCGGCCGAG
ACCTTCGCGC TGTCGGCCAA CAACGCCGCC AACGATCCCG AGATCACCGT CAACAAGGAG
ATCGGCGCCA AGCTCTACTT CCTGGACGGC GCGCTCAACC TCACGGCCGC GCTCTTCAAC
CTGGAGCGCT CGGGCATCAA GAACACCGAT CCGTCCAACC CGGCGCGGCA GATCAACGTG
GGCACGCAGC GCACCAACGG CATGGAACTG GCGCTGGCCG GCAAGCTGCC GGGGCGCTGG
GACGTCAGCG CGGGCTACGC CTACCTGGAC GGCCGCATGG TCAAGTCGCT GGCCACCGTG
AGTTCGCTGC AGCTGCCCAT CGGCGCCGCG ATGCCGGTGC AGGGCAAGGT GGCGCCGCTC
ACGCCGCGGC ACTCGGCCTT CGTGTGGCTC ATGAAGGACC TGGGCCATGG CCTGAGCGCG
GGCGGCGGCG TGAACTACGT GGCCGCGCGC TATGCCTCGC TCAGCAACCT GGTGACGCTG
CCTTCGTATG TCACGGCCGA CCTGGCCGCA AGCTACAGGA CCGAGCGCTA CGAGCTCTCG
GTCAACCTGA AGAACATCAC GGGCAGGAAG TACTACGTGT CCGCGCACGG CAGCGTCGAC
AACCTGATCA TGCCGGGACC GGGGCGCGAG CTGCAGGTGG CACTGACCGC AAAGTTCTGA
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| Protein sequence | MSARPPAVRR RLRRMPLFLA TLAALHCAAE AQTSASTLQE ITVTSEQEPG YAPSVGSTAT
KGSAPLRDIP QAVNVLPAQL LRDQGATSMQ DALRNAPGVS FNAGDGQRDQ VVIRGFTAIA
DWFVDGVRDD ALYFRDLSDT ERIEVLKGPA AVLYGRGSSG GLINRVTKKP IFERPFGEVS
LGLGTHDFKR LTADLNRPIG ENMAFRLNVA REKSGSWRDQ QFIDRYSIAP SLAMKFSPQT
DLLLQYTNAY DQRLTDFGIP ALNGRPVNVP IGTYYGSAFA KRDDATTTRV QSFTATLNHR
FSDTLSLRNT TRYYSYKLDR FNTLPSGTTD PVRMTVGRTR GFVDRDESGW FNQTDLTWRN
ELGGFKQEWL IGAELGKQDK RAYTVSSATG FERVSILNPV SAPPPIPLAS YLGNGAIPSN
TTFKTAALYA QDQITLAPQW KALVGGRYDD FRQETSFERT LAPFSRTDRK FSPRAGLVWQ
PSDSQSYYVS YSRSFQPSAE TFALSANNAA NDPEITVNKE IGAKLYFLDG ALNLTAALFN
LERSGIKNTD PSNPARQINV GTQRTNGMEL ALAGKLPGRW DVSAGYAYLD GRMVKSLATV
SSLQLPIGAA MPVQGKVAPL TPRHSAFVWL MKDLGHGLSA GGGVNYVAAR YASLSNLVTL
PSYVTADLAA SYRTERYELS VNLKNITGRK YYVSAHGSVD NLIMPGPGRE LQVALTAKF
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