Gene Vapar_3972 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3972 
Symbol 
ID7974537 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4215278 
End bp4216150 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content70% 
IMG OID644794558 
Producttranscriptional regulator, LysR family 
Protein accessionYP_002945852 
Protein GI239816942 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.539767 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCACGC TCGATCTTGA ATTGCTGCGC TCCTTCGCGG CCGTCGTCAG CCACCACAGC 
TTTGCGGCGG CCGCCGTGCA CCTGGGTCGC ACGCAGTCGG CCATCACGCA GCAGATGCAG
CGGCTCGAAG AGCAGGTGGG CCACGCGCTG TTCGCCAAGC AGGGCCGGCA GAAGCGCCTC
ACCGAACATG GCGAGCGGCT CCTGACCTAC GCGCACCATC TGCTCGCGCT CAACGACGAG
GCGCTGCGCA GCCTGCGCCA GGGCGAGCTC GAAGGCAACC TGCGCATCGG TGCGCCGCAC
GACGTGGCCG AGACCATGCT GCCGCTGCTG CTCACCGAGG TGGCGCGCAC CTCGCCGCTG
CTGCAACTGG ACATCCACAT CGGCCGCAGC CCCTATCTCA TGACCTCGCT CAAGAGCGGC
GAGGTCGACA TGATCATCTC GAACCGCGCC GACCCGCAGT TCGACGGCGT GGTGCTGCGC
AACTCGCCGA CCGTGTGGCT CTGCGCCGCC AGCTACGTGC ACGACCCGTC CAAGCCGGTG
CCGCTGATCA TGGCTGACGG CCCGAGCATC TTCCGCCGCA TCGGCCACGA GGCGCTCGAC
GCCGCGGGCG TGGCATGGAC GCCGCGCTAC ACCTCGTCGA GCCTGATCGG CATCAAGGCC
GCCTTGCGCG CGGGCCTCGG CGTCACGGCG CGCGGCGTGG AGCAGCTCGA CGCGGGCCTG
CGCGTGCTGG GCGCCGGCGA CGGCATGCCG CGCCTGCCCG ACCTGGCCTA CTACCTGTAC
GTGCGCAGCC ACGTGGTGAA TCCGGTCACG CGGCAGGTGT TCGAGACCTT GAAGAAGCAC
CTGAGGTTGC CGCGGACCGA CATGCCGGCT TGA
 
Protein sequence
MPTLDLELLR SFAAVVSHHS FAAAAVHLGR TQSAITQQMQ RLEEQVGHAL FAKQGRQKRL 
TEHGERLLTY AHHLLALNDE ALRSLRQGEL EGNLRIGAPH DVAETMLPLL LTEVARTSPL
LQLDIHIGRS PYLMTSLKSG EVDMIISNRA DPQFDGVVLR NSPTVWLCAA SYVHDPSKPV
PLIMADGPSI FRRIGHEALD AAGVAWTPRY TSSSLIGIKA ALRAGLGVTA RGVEQLDAGL
RVLGAGDGMP RLPDLAYYLY VRSHVVNPVT RQVFETLKKH LRLPRTDMPA