| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3967 |
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| Symbol | |
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| ID | 7974532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4209955 |
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| End bp | 4211256 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644794553 |
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| Product | D-amino acid dehydrogenase small subunit |
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| Protein accession | YP_002945847 |
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| Protein GI | 239816937 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.194472 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGTCA TCGTTCTCGG CGGCGGCGTG ATCGGCACCA CCACGGCCTA CTACCTGGCG
CGCTCCGGCG CCGACGTGAC GCTGCTCGAC CGGCAGGCCG GCCCGGCCGA GGAAACCAGC
TTCGGCAACG CCGGGCAGGT GTCGCCGGGC TATTCGACGC CATGGGCCGC GCCCGGCATT
CCACTGAAGG CCATCAAGTG GATGTTCCAG AAGCATGCGC CGCTGTCGAT CCGCCCCGAC
GGCACGCTGT TCCAGCTGCG CTGGATGGCG GCCATGCTGC GCAACTGCTC GCCCGAACGC
TATGCGGTCA ACAAGGAACG CATGATGCGG GTGGCCGAAT ACAGCCGCGG CTGCCTGCAG
CAGCTGCGCG CGGAAACCGG CCTCAGCTAC GAGCACCGCA CCGGCGGCAC GCTGCAGCTG
TTCCGCACGC AGGCGCAGCT CGATGCGGTG CAGCGCGACA TCGCGGTGCT CGAGGAATGC
GGCGTGCCCT ACGAACTGCT CGACCGCGAT GCGCTCGCAC GCGTGGAGCC CGCACTGGCC
GGCGCGCGCG ACCGGCTCAC GGGCGGCCTG CGCCTGCCGA ACGACGAGAC CGGCGACTGC
CACCTGTTCA CGCGCGGCCT GGCCGACATC GCGCGCGGCC TGGGCGTGGA CTTCCGCTTC
GGCCAGTCGG TCGAAGGCCT GGAGATGGCG GGCGACCGCA TCACGGGCGT GCGTACCAGC
GCCGGCAAGA TCCTCACGGC CGACCGCTAC GTGATGGCCT TCGGCAGCTA TTCGCGCGCC
GCCATCGCAT CGCTGGGGCT GGCCATTCCG GTGTACCCCG TCAAGGGCTA CTCGCTCACC
GTGCCGCTGG TCGATGAATC GCTGGCACCG CAATCGACCG TGCTCGACGA GACCTACAAG
GTGGCCGTCA CACGTTTCGA CAACCGCATC CGCGTGGGCG GCATGGCCGA GCTCGGCGGC
TTCGACCTGC GCCTGAACCC GCACCGCCGC GCCACGCTCG AGAAGGTGGT GAGCGACCTG
TTCCCGGGCG GCGACCTGCC GCGCGCCACC TTCTGGACCG GCCTGCGCCC GATGACGCCC
GACAGCACGC CCATCGTCGG CGCCACGCGC TACGCGAACC TGTTCCTCAA CACCGGCCAC
GGCACGCTCG GCTGGACCAT GGCCTGCGGC TCGGGCAAGC TCATCTCCGA CCTCGTGACG
GGTCAGCGTC CGGAGATCCG CACCGATGGC CTGGCAATGG ACCGCTATGC GCAAGGTGCG
CCGCGCACTG CGCGTTCGAA TCCCACGACT GCGCCGGCCT GA
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| Protein sequence | MKVIVLGGGV IGTTTAYYLA RSGADVTLLD RQAGPAEETS FGNAGQVSPG YSTPWAAPGI
PLKAIKWMFQ KHAPLSIRPD GTLFQLRWMA AMLRNCSPER YAVNKERMMR VAEYSRGCLQ
QLRAETGLSY EHRTGGTLQL FRTQAQLDAV QRDIAVLEEC GVPYELLDRD ALARVEPALA
GARDRLTGGL RLPNDETGDC HLFTRGLADI ARGLGVDFRF GQSVEGLEMA GDRITGVRTS
AGKILTADRY VMAFGSYSRA AIASLGLAIP VYPVKGYSLT VPLVDESLAP QSTVLDETYK
VAVTRFDNRI RVGGMAELGG FDLRLNPHRR ATLEKVVSDL FPGGDLPRAT FWTGLRPMTP
DSTPIVGATR YANLFLNTGH GTLGWTMACG SGKLISDLVT GQRPEIRTDG LAMDRYAQGA
PRTARSNPTT APA
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