Gene Vapar_3959 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_3959 
Symbol 
ID7970388 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4204429 
End bp4205463 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content67% 
IMG OID644794545 
ProductNMT1/THI5 like domain protein 
Protein accessionYP_002945839 
Protein GI239816929 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAAGC GCCAATTGCT CCAGTCCTTC CTCGCCGCCT CGGCCCTCAG CTTCGGCCTT 
TCCCCGGCCC TGGCCCAGAC GACGACGCCG ATCAAGTTCC AGCTCGACTG GCGCTTCGAA
GGACCGGCCG CGCTGTTCCT GCACCCCGCT GCCAAAGGCT ACTTCAAGGC TGCGGGCCTG
GACGTGACCA TCGACGCGGG CAACGGCTCG GGCGGCACGG TCACGCGCGT GGCCTCGGGG
GCCTACGACA TGGGTTTTGC CGACCTCGCG GCGCTGATGG AATTCCACGC CAACAACCCC
GACAGCCCCA ACAAGCCGGT CGCGGTGATG ATGGTCTACA ACAACACGCC GGCCTCGGTC
ATGGCGCTCA AGAAGAGCGG CATCGCCAAG CCGGGCGACC TCGCGGGCAA GAAGCTCGGC
GCGCCGGTGT TCGACGCGGG CCGCCGCGCG TTCCCGATCT TCGCCAAGGC CAACAGCATC
GGCGCCGTGA ACTGGACCGC CATGGACCCG ACGCTGCGCG AAACCATGCT GATCCGCGGC
GACATCGACG CGATCACCGG CTTCACCTTC ACCTCGCTGC TGAACCTCGA GGCGCGCGGC
GCCAAGGCCG CCGACATCGT CGTGCTGCCC TACCCCGACT ACGGCGTGAA GCTCTACGGC
AACGTGATCA TCGCCTCGCC CAAGCTCATC AAGGAGAACC CGGAAGCGGT GAAGAAATTC
CTCTCGGCCT TTGCCAAGGG GGCGAAGGAA GTGATCGCCA ATCCGGCGGT GGCCATCGAA
TCGGTGAAAG CGCGCGACGG CATCATCGAC AGCAAGCTCG AAACCCGCCG CCTGCAGCTG
GCCATCGACA CCGTGATCAA CAGTGCCGAC GCGCGCAGCG AAGGCTTTGG CGTGGTCAAC
GCGGGCCGCA TGTCGCTGAT GGCCTCGCAG GTGTCGGACG CGTTCAACAC CAAGACCCGC
GTGAGCCCCG ATGCCGTGTG GACCGCCGCG CTGCTGCCGC CCGCGGCCGA ACTGAGCGGC
GTGCTGCGCA AGTGA
 
Protein sequence
MNKRQLLQSF LAASALSFGL SPALAQTTTP IKFQLDWRFE GPAALFLHPA AKGYFKAAGL 
DVTIDAGNGS GGTVTRVASG AYDMGFADLA ALMEFHANNP DSPNKPVAVM MVYNNTPASV
MALKKSGIAK PGDLAGKKLG APVFDAGRRA FPIFAKANSI GAVNWTAMDP TLRETMLIRG
DIDAITGFTF TSLLNLEARG AKAADIVVLP YPDYGVKLYG NVIIASPKLI KENPEAVKKF
LSAFAKGAKE VIANPAVAIE SVKARDGIID SKLETRRLQL AIDTVINSAD ARSEGFGVVN
AGRMSLMASQ VSDAFNTKTR VSPDAVWTAA LLPPAAELSG VLRK