| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3958 |
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| Symbol | |
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| ID | 7970387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4201932 |
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| End bp | 4204235 |
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| Gene Length | 2304 bp |
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| Protein Length | 767 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794544 |
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| Product | malic enzyme |
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| Protein accession | YP_002945838 |
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| Protein GI | 239816928 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0281] Malic enzyme |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTGCTA ACCTGTCACC CGCCGAAGAA GCACTTCGCG AAGCAGCGCG CGAATACCAC
CGCTCGCCCG TCAAGGGCAA GATTTCCATC AGCCCGACCA AGCCGCTCCT GAACCAGCGC
GACCTGTCGC TGGCCTATTC GCCCGGCGTG GCCTACCCGT GCCTGGACAT CGCGGCCGAT
CCGTCGATGG CGGCCGAGTT CACCGCGCGC GGCAACCTGG TGGGCGTGGT CACCAACGGC
ACCGCAGTGC TGGGCCTGGG CAACATCGGC CCGCTGGCCG CCAAGCCGGT GATGGAGGGC
AAGGGCTGCC TCTTCAAGAA ATTTGCCGGC ATCGACGTGT TCGACATCGA ACTGGCCGAG
AACGACCCCG ACAAGCTGGT CGAGATCATC GCGGCGCTCG AGCCCACGCT GGGCGGCATC
AACCTGGAAG ACATCAAGGC GCCCGAGTGC TTCTACATCG AGAAGAAGCT GCGCGAGCGC
ATGAACATCC CGGTGTTCCA TGACGACCAG CACGGCACGG CCATCATCTC GGCCGCGGCG
CTCATCAACG GCCTCGAACT GGTCGGCAAG AAGATCGAGG AGGTCAAGAT CGCCGTCTCC
GGCGCCGGTG CGGCCGCCAT TGCCTGCCTG GACGTGATGG TGGGCCTGGG CGCCAAGCCC
GCCAACATCT ACGCCTGCGA CTCCAAGGGC CTGATCTACA TGGGCCGCGC GGGCGGCTTC
GACGACTCCA AGGCGCGCTA CGCCCAGAAA GACACCGGCG CCCGCACCCT GGCCGACGTG
GTGAAGGACG CCGATGTGTT CCTGGGCTGC TCCGCGCCCG GCGTGATGAG CGCCGACATG
GTCAAGACCA TGGCCGGCCA GCCGATCATC CTGGCGCTGG CCAACCCCGA GCCCGAGATC
CGCCCCGAGC TCGCCAAGGC CGTGCGGCCC GACTGCATCA TTGCCACCGG CCGCTCGGAC
TATCCGAACC AGGTCAACAA CGTGCTGTGC TTCCCGTACA TCTTCCGCGG CGCGCTCGAC
TGCGGCGCCA GCAAGATCAC GGAAGAAATG AAGCTGGCCT GCGTGCGCGA GATCGCCGAG
CTCACCAAGG CCGACATCAG CGAAGAGGTG GCCACCGCCT ACGCCGGGCA GGAGCTGTCC
TTCGGGCCCG ACTACATCAT TCCCAAGCCC TTCGATTCGC GGCTGATCCT GCGCATTGCG
CCGGCCGTGG CCAAGGCAGC GGCCGCCTCC GGCGTGGCCG CGCGCCCGAT CGAGGACCTG
GAGGCCTACC GCCAGCACCT CACGCGCTTC GTGTTCCAGA CCGGCATGTT CATGCGCCCG
GTGTTCAGCG CCGCCAAGAT CGCGGCCGCC AAGCGCGTGG CCTATGCCGA GGGCGAGGAC
GAACGCGTGC TGCGCGCGGC GCAGTGGGCC ATCGACGAGG GCCTGGCCCA GCCCATCCTG
GTGGGGCGCC CGGCCGTGAT CGAGGCGCGC ATCCAGAAGG CCGGCCTGCA CATCCGCGCG
GGAACCGACT TCGAGATCGT CAACCCCGAG GACGATCCGC GCTTTCGCAC CTACTGGGAG
ACCTTCCACA AGGTCATGGG CCGCCGCGGC GTCACGCCCG AGGCCGCCAA GACCATGGTG
CGCCGCTCCA ACACCACCAT CGCGGCGCTG ATGATGCACC TGGGCGATGC CGACGCCATG
ATCTGCGGCC TGGTCGGGCG CTTCGACGTG CATCTGGAGC ACATCCGCAA CCTGATCGGC
CTGAAGCGCG GCGCGCCGGG CTTCGCCACG CTCAATGCGC TCACGCTCGA GAAGCGCACG
GTGTTCATCA CCGACACCAA CGTGAACGAA GACCCGAGCG CCGAGCTGCT CGCGAGCATC
GCCATGATGG CGGCCGAAGA GGTGCGCCGC TTCGGCCTGC CGCCGAAGGT GGCTTTTCTC
TCGCACTCGA ACTACGGCAC CTCGAGCCGC GGCTCGGCGC GCAAGATGCG GCTCGCGCGC
GACCTGTTCG CGCAGATGGC GCCCGACATC GAATGCGACG GCGAGATGCA CGGCGACGCG
GCGCTGTCCG AAGAAGTGCG CCGCACCGCC CTGCCCGAGA GCACGCTCAC CGGCGAAGCC
AACCTGCTCG TGTGCCCCAA CCTCGACTCG GCCCACATCC TCTACAACGT GCTGAAGATG
ACGGGCGCCA ACGGCATCAC CGTCGGCCCG ATCCTGCTCG GCGCCGCAGG CTCGGCGCAT
GTGCTCACGC CCTCGTCGAC GGTGCGGCGC GTGGTCAACA TGACGGCGCT GGCGGTGGCG
AACGCGACGA CCGCGCTCAA GTAG
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| Protein sequence | MAANLSPAEE ALREAAREYH RSPVKGKISI SPTKPLLNQR DLSLAYSPGV AYPCLDIAAD
PSMAAEFTAR GNLVGVVTNG TAVLGLGNIG PLAAKPVMEG KGCLFKKFAG IDVFDIELAE
NDPDKLVEII AALEPTLGGI NLEDIKAPEC FYIEKKLRER MNIPVFHDDQ HGTAIISAAA
LINGLELVGK KIEEVKIAVS GAGAAAIACL DVMVGLGAKP ANIYACDSKG LIYMGRAGGF
DDSKARYAQK DTGARTLADV VKDADVFLGC SAPGVMSADM VKTMAGQPII LALANPEPEI
RPELAKAVRP DCIIATGRSD YPNQVNNVLC FPYIFRGALD CGASKITEEM KLACVREIAE
LTKADISEEV ATAYAGQELS FGPDYIIPKP FDSRLILRIA PAVAKAAAAS GVAARPIEDL
EAYRQHLTRF VFQTGMFMRP VFSAAKIAAA KRVAYAEGED ERVLRAAQWA IDEGLAQPIL
VGRPAVIEAR IQKAGLHIRA GTDFEIVNPE DDPRFRTYWE TFHKVMGRRG VTPEAAKTMV
RRSNTTIAAL MMHLGDADAM ICGLVGRFDV HLEHIRNLIG LKRGAPGFAT LNALTLEKRT
VFITDTNVNE DPSAELLASI AMMAAEEVRR FGLPPKVAFL SHSNYGTSSR GSARKMRLAR
DLFAQMAPDI ECDGEMHGDA ALSEEVRRTA LPESTLTGEA NLLVCPNLDS AHILYNVLKM
TGANGITVGP ILLGAAGSAH VLTPSSTVRR VVNMTALAVA NATTALK
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