| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3953 |
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| Symbol | |
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| ID | 7970382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4195751 |
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| End bp | 4196653 |
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| Gene Length | 903 bp |
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| Protein Length | 300 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644794539 |
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| Product | transcriptional regulator, LysR family |
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| Protein accession | YP_002945833 |
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| Protein GI | 239816923 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.319845 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACAGAT TGTTGGCAAT GGAAATGTTC GTGCGCGTGG TCGAGACCGG CAGCTTCTCG
AAGGCGGCGC TCGAGTTCCA CACCACCCAG CCCACCGTGA CCAAGCAGGT CGCGGCCACC
GAGGCGCGGC TGAAGGTGCG GCTGCTCAAC CGCAACACGC GCGGCGTGAG CCTCACGGAG
CCGGGCGCGC TCTACTACGA GAAGTGCAAG AACATCGTGC GCGAAGCCGA GGAGGCCGAG
AGCATCGTGC GGCTGCGCCA GAACCAGGCG CAGGGGCTGC TGCGCATCGG CACCTCGGTG
GCCTTCGGCC GCCGCGTGGT GGTGCCGCTG GCGCTCGAAT ACATGCGCCG GCATCCGCAG
GTGCAGCTCG ACCTGAGCTT CGAGGACCGC TATGTCGACC TCATCGCGCA GGGCATCGAC
GTGGCCATCC GCATGGGCAA GCTGGCCGAT TCGTCGCTGG GCGCGCGCTA CCTGGGCACC
AATCCCTGGG CCATGGTCGC GGCGCCGGGC TACCTGAAGA AGCACGGCAC GCCCAAACGC
GCGCAGGACC TGAGCGCGCA CGTGGCGCTC ATCTACAGCA GCGTGGTGGG CGACGAGTTC
TGGCGCATGC ACACGCCCAA GGGCGATCCG GTGACGGTGC CGGTCTCGGG GCGCTTCCGG
TCCAACAACC TTTCCGCGGT GCTGGCGGCG GCGCGCGACG GCCTGGGCAT TGCGCTGATG
CCGCGCTACG TGGCGAGCGA ATCGCTGGCC TCGGGCAAGG TGCTCGAAGT GCTGGGCGAC
CACAAGCTGC CCGAGCAGGA GATCCACGCC GTCTTTCCCT CGCCCAAGCT GGTGCCGGGC
AAGGTGTCGG GTTTCGTGGC CTTCCTGCAG GGGCGCTTTG CCGAAGGCTG GTGGGGCGGC
TGA
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| Protein sequence | MDRLLAMEMF VRVVETGSFS KAALEFHTTQ PTVTKQVAAT EARLKVRLLN RNTRGVSLTE
PGALYYEKCK NIVREAEEAE SIVRLRQNQA QGLLRIGTSV AFGRRVVVPL ALEYMRRHPQ
VQLDLSFEDR YVDLIAQGID VAIRMGKLAD SSLGARYLGT NPWAMVAAPG YLKKHGTPKR
AQDLSAHVAL IYSSVVGDEF WRMHTPKGDP VTVPVSGRFR SNNLSAVLAA ARDGLGIALM
PRYVASESLA SGKVLEVLGD HKLPEQEIHA VFPSPKLVPG KVSGFVAFLQ GRFAEGWWGG
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