| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3952 |
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| Symbol | |
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| ID | 7970381 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4194233 |
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| End bp | 4195732 |
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| Gene Length | 1500 bp |
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| Protein Length | 499 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644794538 |
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| Product | Carotenoid oxygenase |
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| Protein accession | YP_002945832 |
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| Protein GI | 239816922 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG3670] Lignostilbene-alpha,beta-dioxygenase and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.273513 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACGAC GCGAACTCCT GCGCCTGCTG GTCTCGGCCG GCGCCCTGCA TCTCTTGCCA
CCGCTGGCCC GCGCGGCCGG CACCGCCGAC GACTGGCAGG CCCGGTTCGA AGCCGCCGGT
GCGCCCTGGA AGACCGGCTT CGCCACGCCC CCGGACGACC TGCCCCTGAC CCGCGCCACG
GTGCGCGGGC GCTTCCCCGA TGCCGTGGCC GGCACGCTCT TTCGCATCGG CCCGGCCGGC
CACGACCTGG GCGGCGAGCG CTACCACCAC TGGTTCGACG GCGACGGCAT GGTGCACCGC
TTCGTGATCG AGGGGGCCGA CGTGCGGCAC CAGGGCCGCT ATGTCGCCAC GCCCAAGCGC
GTGGCCGAGG TGCGGGCCGG CCGCCGCCTG TTCGAGGCCT TCGGCACCAT GCCGCCGGGC
GTCGAGCCGC CGACCTCGGC CGACAGCATC AACGTGGCCA ACACCAGCGT GCTGCCGATG
CAGGGCGAGG TGCTGGCGCT CTGGGAAGGC GGCTCGGCCA CGCGCGTCGA TGCGCGCACG
CTGGACACGC TGGGCGTGAA GACCTGGCGG CCCGACCTCG CAGGCATGCC GTTCTCGGCC
CATCCCAAGG TCGATCCGGA CGGCACGGTG TGGAACTTTG GCGTGAGCTC CGGCCAGGGC
CTGCTGGCGC TGTACGAGAT TGCGCCCGAA GGCACGCTGC GGCGCGCAGC CGTAGTGCCG
GTGGCCGACA TGCCGATGGT CCATGACTTC GCCGTGACCG AACGGCACCT GGTGTTCCTG
ATGCCGCCGC TGGTCTACGA CGGCAAGCGC AAGGAGGCGG GTGCGAGCTT TCTCGATGCC
CACGTCTGGC GGCCGGAACT CTGCATGCGC GCCCTGGTGG TCGACAAGCA GAACTGGGAG
CGGCGCCAAC TGCTCGCGCT GCCGGCCGGC TTCCTGTTCC ACGTCGGCAA TGCCTGGGAA
GAAGACACGC CGCACGGCAC CCTCGTCCAC ATCGACTACG TACGTTCGGA CAACGCCGAC
TCGGTGTTCA CGACCAACCG CGAAGTGATG CGCGCGCGCC GCGTGAAGAG CACCCACCCG
CGGCTGACCG TCGCCACGCT GAACCTCGGC ACCGGCCGGG CCACGCAGCA GGTGCTGGCG
CAGGAAGCCG AGTTTCCGCG CATCGACCCG CGGCGCGTCG GCCTGCGGCA CCGCCAGGTG
GTTCATGCCA CCCAGACGCG CCTCGATGTG CCGGGCTTCG GCGCCATCGC GCGGACCGAT
GTCGAAAGCG GCCGCAGCCA GCGCTTCAGC TACGGCGCGC AGACCATGGT GGAAGAGCAT
GTCTTCGTGC CGGACGGCAC CGGGCCGGGC TGGGTGCTGG GCACGGTGCT CGATTTCGGC
CGGCAGAAGA CCGTGCTGTC GTGCTTTGCG GCCGACCACC TGGCGGCGGG CCCGGTGGCA
CAAGCCACCC TGTCCTACGC CCTGCCGCTG GGCCTGCACG GCGCCTTCGT GCCGGCCTGA
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| Protein sequence | MERRELLRLL VSAGALHLLP PLARAAGTAD DWQARFEAAG APWKTGFATP PDDLPLTRAT
VRGRFPDAVA GTLFRIGPAG HDLGGERYHH WFDGDGMVHR FVIEGADVRH QGRYVATPKR
VAEVRAGRRL FEAFGTMPPG VEPPTSADSI NVANTSVLPM QGEVLALWEG GSATRVDART
LDTLGVKTWR PDLAGMPFSA HPKVDPDGTV WNFGVSSGQG LLALYEIAPE GTLRRAAVVP
VADMPMVHDF AVTERHLVFL MPPLVYDGKR KEAGASFLDA HVWRPELCMR ALVVDKQNWE
RRQLLALPAG FLFHVGNAWE EDTPHGTLVH IDYVRSDNAD SVFTTNREVM RARRVKSTHP
RLTVATLNLG TGRATQQVLA QEAEFPRIDP RRVGLRHRQV VHATQTRLDV PGFGAIARTD
VESGRSQRFS YGAQTMVEEH VFVPDGTGPG WVLGTVLDFG RQKTVLSCFA ADHLAAGPVA
QATLSYALPL GLHGAFVPA
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