| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_3945 |
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| Symbol | |
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| ID | 7970374 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4186507 |
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| End bp | 4187865 |
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| Gene Length | 1359 bp |
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| Protein Length | 452 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644794531 |
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| Product | metabolite/H+ symporter, major facilitator superfamily (MFS) |
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| Protein accession | YP_002945825 |
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| Protein GI | 239816915 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCTA TTGCCAGCGC CAGCGCCACC GCCGGTGCCT CCAGCCCGGA CGCGACGAGC
GCCAACGTTC CCAACACCAC GCCCTACACC TTCGAGGAAA AGCGCAAGCG CATCTTCGCC
ATCTTTGCCG CTTCGTCCGG CAACCTGGTG GAGTGGTTCG ACTTCTACGT CTACGCCTTC
TGCGCGATCT ATTTCGCGCC CTCGTTCTTT CCCAAGTCGG ACCCCACGGT CCAGCTGCTG
AACACGGCGG GCGTGTTTGC CGCCGGCTTC CTGATGCGCC CGATCGGCGG CTGGCTGTTC
GGCCGGCTGG CCGACCGCAA GGGCCGCAAG ACCTCGATGG TGACCTCGGT CGTCATGATG
TGCGTGGGCT CGCTGGTCAT CGCCTGCCTG CCCACCTATG CGCAGATCGG CGCCTGGGCG
CCCGCGCTGC TTTTGGCCGC GCGCCTCTTG CAGGGCCTGT CGGTCGGCGG CGAGTACGGC
ACCACCGCCA CCTACATGAG CGAGGTGGCG ATGCGCGGCC AGCGCGGCTT CTTCTCGTCG
TTCCAGTACG TCACGCTCAT CGGCGGCCAG CTCTTGGCCG TGGTGGTCGT GGTGGTGCTG
CAGCAGCTGC TCGACGATGC CGAACTCAAG GCCTGGGGCT GGCGCATTCC CTTCGTGCTG
GGCGCCGTGG CGGCCATCGT GGCGCTGATG CTGCGCCGCA CGCTGACGGA AACCGCCAGC
ACGCAGACCC GCGCCGCCAA GGGCGCCGGC AGCGTCGCCG AGCTGTTCAA ACACCACAAG
CGCGCCTTCT TCGTGGTGCT GGGCTACACG GCCGGCGGCT CGCTGATCTT CTACACCTTC
ACCACCTACA TGCAGAAGTA CCTGGTGAAC TCGGCCGGCA TGTCCATCAA GACCGCCAGC
AACGTGATGA CCGCCTGCCT GTTCATCTAC ATGTGCATGC AGCCGCTGTT CGGCGCGCTG
TCGGACCGCA TCGGCCGGCG CAGCAACATG CTGCTGTTCG GTGCGCTCGG CGCGCTGATG
ACGGTGCCCG TCTTGAGCAA CCTGCAGAGC GTGGGCAGCC CGCTGATGGC CGGCGTGCTG
ATCACGCTGG CGCTCGCGGT GGTGAGCTTC TACACCTCGA TCAGCGGCAT CGTGAAGGCC
GAGATGTTCC CGCCCGAAGT GCGCGCGCTG GGCGTGGGCC TGTCGTATGC GGTGGGCAAC
GCCATCTTCG GCGGCAGCGC CGAATACGTG GCGCTGGGCC TGAAGTCGAT CGGCCACGAG
TCCTACTTCT ACTGGTACGT GACCGCGATG ATGGGCGTGG CCTTCCTGGT GAGCCTGCTG
CTGCCCAAGC AGGCAAGCTA CCTGCACCAC GACAAGTAG
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| Protein sequence | MTAIASASAT AGASSPDATS ANVPNTTPYT FEEKRKRIFA IFAASSGNLV EWFDFYVYAF
CAIYFAPSFF PKSDPTVQLL NTAGVFAAGF LMRPIGGWLF GRLADRKGRK TSMVTSVVMM
CVGSLVIACL PTYAQIGAWA PALLLAARLL QGLSVGGEYG TTATYMSEVA MRGQRGFFSS
FQYVTLIGGQ LLAVVVVVVL QQLLDDAELK AWGWRIPFVL GAVAAIVALM LRRTLTETAS
TQTRAAKGAG SVAELFKHHK RAFFVVLGYT AGGSLIFYTF TTYMQKYLVN SAGMSIKTAS
NVMTACLFIY MCMQPLFGAL SDRIGRRSNM LLFGALGALM TVPVLSNLQS VGSPLMAGVL
ITLALAVVSF YTSISGIVKA EMFPPEVRAL GVGLSYAVGN AIFGGSAEYV ALGLKSIGHE
SYFYWYVTAM MGVAFLVSLL LPKQASYLHH DK
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