Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_3939 |
Symbol | |
ID | 7970368 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 4178674 |
End bp | 4179732 |
Gene Length | 1059 bp |
Protein Length | 352 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644794525 |
Product | NAD-dependent epimerase/dehydratase |
Protein accession | YP_002945819 |
Protein GI | 239816909 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000297127 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAAAAAA CCAAGGCCTT GAGGTCCGCG TTCGTCACCG GCGCGACCGG CCTTCTCGGC AACAACCTGG TGCGCGAACT GGTCGCGCGC GGCGTCTCGG TCAAGGCCCT TGTCCGCTCG AAGGCCAAGG GCCAGCAGCA GTTTGCGGGC GTGAAGGGCG TCGAACTGGT GCTGGGCGAC ATGGCCGATG CGCCCGCCTT CGCCGGCGCG CTGCAAGGCT GCGACGTGGT GTTCCACACC GCCGCGTTCT TCCGGGACAA CTTCAAGGGC GGCAGCCACT GGCAAGAGCT CAAGCGCATC AATGTGGACG GCACGCGGCA GCTCATCGAG CAGGCCTACG GTGCGGGCAT CCGGCGCTTC GTCCAGACCT CGTCCATCGC GGTGCTCAAC GGCGAGCCGG GCGTGCCCAT GGACGAGACC TGCCTGCGCG AGCTGGCCGA CGCCGGCGAC GACTACTACC GCAGCAAGAT CATGGCCGAC CAGGTCGTGT CGGCCTTTCT GGGCACGCAC CCGGACATGC ATGCGAGCTT CGTCCTGCCC GGATGGATGT GGGGACCGGC CGATATCGGC CCCACCTCGT CAGGACAATT CGTCAATGAC GTGGTGCTCG GAAAACTGCC CGGGCTGGTG CCCGGCAGTT TTTCCGTCGT CGACGCCCGC GATGTGGCCA GGGCGCAGAT CTCGGCCGCG GAGCACGGGC AGCGCGGCGA ACGCTACCTG GCGGCCGGCC GCCACATGAC GATGCAGGAA CTGGTTCCCC TGGTGGGAAA GATCGCAGGC ATCAAGACGC CGACGCGCCA TTTGCCCTTT CCGCTCCTGT ATCTGCTGGC GGCGGTGCAG GAGCTCTACG CGCGGACCAC CGGCAAGCCC ATCCTGCTCA GCCTGGCCAC CGTGCGGCTG ATGCGCAAGG AGGCGGGGCG CAGCCATTTC AATCACACGA AGAGCGAGCA GAAGCTTCAG CTGAAGTTTC GCCCGGTCGA GCAGACCGTT GCCGACACGC TCGCCTGGTA TCGCGGCAAT GGCTGGCTGC CCGGTGTGCC GGCCCGAACC GAATCCTGA
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Protein sequence | MEKTKALRSA FVTGATGLLG NNLVRELVAR GVSVKALVRS KAKGQQQFAG VKGVELVLGD MADAPAFAGA LQGCDVVFHT AAFFRDNFKG GSHWQELKRI NVDGTRQLIE QAYGAGIRRF VQTSSIAVLN GEPGVPMDET CLRELADAGD DYYRSKIMAD QVVSAFLGTH PDMHASFVLP GWMWGPADIG PTSSGQFVND VVLGKLPGLV PGSFSVVDAR DVARAQISAA EHGQRGERYL AAGRHMTMQE LVPLVGKIAG IKTPTRHLPF PLLYLLAAVQ ELYARTTGKP ILLSLATVRL MRKEAGRSHF NHTKSEQKLQ LKFRPVEQTV ADTLAWYRGN GWLPGVPART ES
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